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The map label for this gene is 209696282

Identifier: 209696282

GI number: 209696282

Start: 3128367

End: 3128852

Strand: Direct

Name: 209696282

Synonym: VSAL_I2883

Alternate gene names: NA

Gene position: 3128367-3128852 (Clockwise)

Preceding gene: 209696281

Following gene: 209696286

Centisome position: 94.08

GC content: 36.21

Gene sequence:

>486_bases
ATGAAATCTACTAACTCAAATATAATTATCATTGCTATTGCTGTACTTGGTGCAGGTGCAATCTCTGTATTTCCATCGGT
ATCTCCTGCATTTGCTTTTGCTTTCGGCGCAGTAATTACAGGTTTTACTCTTTTATTCATTAATAAAGCACCGTCTAAAT
CTAAAACAGTAACAGACACTATTTCTAGTGCTGATACTTCAGATCAAGCGAGTACTACCCTTTATGTAGGTAACCTTCCT
TATCGAGCGAATGAATCAGATGTAAAAGATTTATTTTCTGAATTTGGTGATGTGTTTGCTGTTCGTCTGATGAAAGACAA
ACGTACAGGTAAACGTAGAGGATTTGGTTTTGTTGTTGTGGCAACAAAGGACGCTGATAATGTTATTGAAAACTTAAACA
ATAACGAATTTGATCAACGTACTTTAAAAGTTCGCATTGCTAACGATCCAAAGACTTCGGGTAGCCTAGAGTCTGAAGAG
GATTAA

Upstream 100 bases:

>100_bases
CTTAATTAGTTGGCAATTGATAAATAATATAAGTAGTATCAATGTGATTTTATTGTTAATTCATCATTTTTTCACTTATT
TTAACTAGACATTACTTATC

Downstream 100 bases:

>100_bases
AATCTAATTCTTTGAAAGTCTTATTTAGTGCCTCTTCATTTTTTGTTGAGGCACTACAATAAACTTCCCCAAACAAATGA
TCTCCTTTATTAGCGTCAAC

Product: RNA binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKSTNSNIIIIAIAVLGAGAISVFPSVSPAFAFAFGAVITGFTLLFINKAPSKSKTVTDTISSADTSDQASTTLYVGNLP
YRANESDVKDLFSEFGDVFAVRLMKDKRTGKRRGFGFVVVATKDADNVIENLNNNEFDQRTLKVRIANDPKTSGSLESEE
D

Sequences:

>Translated_161_residues
MKSTNSNIIIIAIAVLGAGAISVFPSVSPAFAFAFGAVITGFTLLFINKAPSKSKTVTDTISSADTSDQASTTLYVGNLP
YRANESDVKDLFSEFGDVFAVRLMKDKRTGKRRGFGFVVVATKDADNVIENLNNNEFDQRTLKVRIANDPKTSGSLESEE
D
>Mature_161_residues
MKSTNSNIIIIAIAVLGAGAISVFPSVSPAFAFAFGAVITGFTLLFINKAPSKSKTVTDTISSADTSDQASTTLYVGNLP
YRANESDVKDLFSEFGDVFAVRLMKDKRTGKRRGFGFVVVATKDADNVIENLNNNEFDQRTLKVRIANDPKTSGSLESEE
D

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI14149675, Length=92, Percent_Identity=40.2173913043478, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI4557493, Length=92, Percent_Identity=40.2173913043478, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI238859597, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=37.6623376623377, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17137710, Length=89, Percent_Identity=35.9550561797753, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17338; Mature: 17338

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTNSNIIIIAIAVLGAGAISVFPSVSPAFAFAFGAVITGFTLLFINKAPSKSKTVTDT
CCCCCCCEEEEEEEHHCCCHHHHCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHH
ISSADTSDQASTTLYVGNLPYRANESDVKDLFSEFGDVFAVRLMKDKRTGKRRGFGFVVV
HCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
ATKDADNVIENLNNNEFDQRTLKVRIANDPKTSGSLESEED
EECCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSTNSNIIIIAIAVLGAGAISVFPSVSPAFAFAFGAVITGFTLLFINKAPSKSKTVTDT
CCCCCCCEEEEEEEHHCCCHHHHCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHH
ISSADTSDQASTTLYVGNLPYRANESDVKDLFSEFGDVFAVRLMKDKRTGKRRGFGFVVV
HCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
ATKDADNVIENLNNNEFDQRTLKVRIANDPKTSGSLESEED
EECCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA