Click here to switch to the map view.

The map label for this gene is secE [H]

Identifier: 209696272

GI number: 209696272

Start: 3111924

End: 3112301

Strand: Reverse

Name: secE [H]

Synonym: VSAL_I2872b

Alternate gene names: 209696272

Gene position: 3112301-3111924 (Counterclockwise)

Preceding gene: 209696275

Following gene: 209696271

Centisome position: 93.6

GC content: 39.15

Gene sequence:

>378_bases
ATGAAAACAAATACTGAGACGACAGAAACTTCAGGCGCAGTTGATACAATAAAGTGGTTACTAGTTTTAGTTCTACTTTC
TGCTGCGGTAATTGGTAATTATTTACTAGCTGATTTGTCTGTTGTTATTCGAGCTGCCGGCGTAGTTGCATTAATTGCTG
CTGCTGGTGGTATTGCTGCCTTCACAGCAAAAGGTCAAACTGCAATTGAATTTGCTCGCGAATCAAGAATGGAAGTACGT
AAGGTTGTTTGGCCTACACGGCAAGAAACAACACAAACAACTTTCATTGTTCTTGCTGTATGTATCGTAATGGCTCTTAT
TTTATGGGGTATTGATGGTATTATGGTAAGACTAATTGGCTTAATCACAGGTGTTTGA

Upstream 100 bases:

>100_bases
GCTGGTTTATAGGATGAAGAGAGTAGGGTATATTTACTCTTGTTTTTGAATTTCTGTCTAATGATGGAAAATGATTTTAG
TTATGTCACAGGTTGGTTTT

Downstream 100 bases:

>100_bases
GGATAAGTGATCATGAGTGAAGCTCCAAAGAAACGTTGGTATGTAGTTCAAGCCTTTTCAGGGTTTGAAGGTCGTGTATC
TCAATCGTTACGCGAATATA

Product: preprotein translocase subunit SecE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKTNTETTETSGAVDTIKWLLVLVLLSAAVIGNYLLADLSVVIRAAGVVALIAAAGGIAAFTAKGQTAIEFARESRMEVR
KVVWPTRQETTQTTFIVLAVCIVMALILWGIDGIMVRLIGLITGV

Sequences:

>Translated_125_residues
MKTNTETTETSGAVDTIKWLLVLVLLSAAVIGNYLLADLSVVIRAAGVVALIAAAGGIAAFTAKGQTAIEFARESRMEVR
KVVWPTRQETTQTTFIVLAVCIVMALILWGIDGIMVRLIGLITGV
>Mature_125_residues
MKTNTETTETSGAVDTIKWLLVLVLLSAAVIGNYLLADLSVVIRAAGVVALIAAAGGIAAFTAKGQTAIEFARESRMEVR
KVVWPTRQETTQTTFIVLAVCIVMALILWGIDGIMVRLIGLITGV

Specific function: Essential for protein export [H]

COG id: COG0690

COG function: function code U; Preprotein translocase subunit SecE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secE/SEC61-gamma family [H]

Homologues:

Organism=Escherichia coli, GI1790413, Length=125, Percent_Identity=55.2, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001901
- InterPro:   IPR005807 [H]

Pfam domain/function: PF00584 SecE [H]

EC number: NA

Molecular weight: Translated: 13273; Mature: 13273

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01067 SECE_SEC61G

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNTETTETSGAVDTIKWLLVLVLLSAAVIGNYLLADLSVVIRAAGVVALIAAAGGIAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FTAKGQTAIEFARESRMEVRKVVWPTRQETTQTTFIVLAVCIVMALILWGIDGIMVRLIG
HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LITGV
HHHCC
>Mature Secondary Structure
MKTNTETTETSGAVDTIKWLLVLVLLSAAVIGNYLLADLSVVIRAAGVVALIAAAGGIAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FTAKGQTAIEFARESRMEVRKVVWPTRQETTQTTFIVLAVCIVMALILWGIDGIMVRLIG
HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LITGV
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]