| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is csgE [C]
Identifier: 209696259
GI number: 209696259
Start: 3094644
End: 3095105
Strand: Reverse
Name: csgE [C]
Synonym: VSAL_I2857
Alternate gene names: 209696259
Gene position: 3095105-3094644 (Counterclockwise)
Preceding gene: 209696260
Following gene: 209696258
Centisome position: 93.08
GC content: 33.77
Gene sequence:
>462_bases ATGAATAAATATATTTTATTTAAAGTACTTATGGCGTTACTTTTTTCTTCTCTATCGAATGCTTCTGAAAGCAAAGCAGC ATTAGAAAATTCGACACCATTAGAAAAAGACAAGGTAAATGAGGTTGATGACCTTGTTGAGATTGATGGGTTAATTATTG ATCGTACTTTAACTCGATTAGGAAAAGATTTTTATTTTTCTTTTTCCATAAAAATGAACAGTAAATACGATGATCTAGGC GTGAACTTAACTGTAAAAGAGAGACCAACAGCATTATCTGGCAGCATTATCGGGGTTTACCATTTTGATAAGGTGATTTA TCGAGGCGCTCTTTCTCCAGGTCAAAGACAAGCAGAAGAGAAAGCAGAGCAAGCAGTAGAAGCGGTTAATCAATATATCG TGAAATGGCAAACAGAAAAATTATTTAAAGATACATATGATCTCGATTTTCCGGAGATCTAA
Upstream 100 bases:
>100_bases TTAAAACACATTTGCATAATGTATTTAAAAAATTGAATGTAAAGAATCGCTTGCAAGCAATGATATGGACAAAGGGGTAT GACTTTGAAGGGATAAGTGA
Downstream 100 bases:
>100_bases GGATGTAGCATGAACATAAGGATCATACTCTTTATTCTGATCAATATGGTAGCAAGCGTAGGTCAAGCAAGTGAGCTTGT TTATATTCCAGTAAATCCAA
Product: assembly/transport component in curli production, CsgE precursor
Products: NA
Alternate protein names: Assembly/Transport Component In Curli Production CsgE
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MNKYILFKVLMALLFSSLSNASESKAALENSTPLEKDKVNEVDDLVEIDGLIIDRTLTRLGKDFYFSFSIKMNSKYDDLG VNLTVKERPTALSGSIIGVYHFDKVIYRGALSPGQRQAEEKAEQAVEAVNQYIVKWQTEKLFKDTYDLDFPEI
Sequences:
>Translated_153_residues MNKYILFKVLMALLFSSLSNASESKAALENSTPLEKDKVNEVDDLVEIDGLIIDRTLTRLGKDFYFSFSIKMNSKYDDLG VNLTVKERPTALSGSIIGVYHFDKVIYRGALSPGQRQAEEKAEQAVEAVNQYIVKWQTEKLFKDTYDLDFPEI >Mature_153_residues MNKYILFKVLMALLFSSLSNASESKAALENSTPLEKDKVNEVDDLVEIDGLIIDRTLTRLGKDFYFSFSIKMNSKYDDLG VNLTVKERPTALSGSIIGVYHFDKVIYRGALSPGQRQAEEKAEQAVEAVNQYIVKWQTEKLFKDTYDLDFPEI
Specific function: May Be Involved In The Biogenesis Of Curli Organelles. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17397; Mature: 17397
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKYILFKVLMALLFSSLSNASESKAALENSTPLEKDKVNEVDDLVEIDGLIIDRTLTRL CCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHC GKDFYFSFSIKMNSKYDDLGVNLTVKERPTALSGSIIGVYHFDKVIYRGALSPGQRQAEE CCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHH KAEQAVEAVNQYIVKWQTEKLFKDTYDLDFPEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNKYILFKVLMALLFSSLSNASESKAALENSTPLEKDKVNEVDDLVEIDGLIIDRTLTRL CCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHC GKDFYFSFSIKMNSKYDDLGVNLTVKERPTALSGSIIGVYHFDKVIYRGALSPGQRQAEE CCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHH KAEQAVEAVNQYIVKWQTEKLFKDTYDLDFPEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA