| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is insG [H]
Identifier: 209696230
GI number: 209696230
Start: 3060371
End: 3061696
Strand: Reverse
Name: insG [H]
Synonym: VSAL_I2826
Alternate gene names: 209696230
Gene position: 3061696-3060371 (Counterclockwise)
Preceding gene: 209696233
Following gene: 209696227
Centisome position: 92.08
GC content: 39.14
Gene sequence:
>1326_bases ATGCACTTGGATTTTTTTATGGATGTTTCTCAAGCTCTAAACATAATCAATGACTGGAAACCTAGCAACGTAGAGACTCT CGCTGATTTACTTCCAATCCATCTGATTGATGAGGCTTATTCTCTCACTGATACGGTGACGATGAGGAAGCGAAAGCTTA CTCTTGAATCAATGGTATGGTTACTTGTTGGTATGGCTATCTATAACAATAAATCCATGAAGGATTTAGTTAATCAGCTT GATATTGTAGACCGTACAGGTAAAGCTTTTGTCGCTCCTAGTGCCCTTACTCAGCGCCGAAAAAATCTAGGTGAAGCAGC AATGAAAGCAGTCTTTGAGCGAATGACAAGTTCCTGGCTTAAGAGTGCTAATCTTCCTAAATGGAATGGACTAACTCTCT TAGGCGTTGATGGTGTTGTATGGAGAGCACCTGATAACCAGAAAAATGAAGAGGCTTTTTCTCGCCAAAAAGGAACTCAA TATCCACAGGTAAGAATGGTTTGCCAAATGGAGCTAAGCAGTCATCTTATTACAGCGAGCGCTTTCGATAATTACAATAC AAATGAAATGATATTGGCAGAGAAGTTAATAGATAGTACACCTGACCATAGCGTAACTATGTTCGATAAGGGGTTCTATT CATTAGGATTACTACATAAATGGCAGATGACAGGCTCAGAGCGTCACTGGCTTATTCCCCTTAAAAAAAATACTCAATAT GAAATAATTCGATCGCTAGGTCGTAATGACAAACTTGTTATTCTTCGGAGTAACCCAAGAGCAAGAAAACTGTTTTCTAA TTTACCTGAAACGATGACTGCTCGTCTCGTGACTCGAAAAATTAAAGGAAAAGATTATCAAGTTCTGACGTCAATGATTG ACCCATTACGTTACCCATTGAAAGATATAGTCGGTCTTTATGAGCATCGTTGGGAAATAGAATTGGGTTACCGAGAGCAG AAACAATACATGTTAGGAAATCGCTTAACACTACGAAGCCGTCTGCCTGAATTAGTGAAACAAGAACTATGGGGTATCTT GTTGACTTATAATTTAATTCGCTACCAAATGGTAGAGCTTTGCTTTAATTTAAAAGGAAATTATCTCCCTTATCAATTGA GTTTTAATGGGACACTTGCTCATGTATCTGCATTATTAGTTGGTTTACCATACTCAACGCCAGGAGCGATCCCTCGACAA TTAAAAGGCTTCCACCAGATGGCTGAAAGCTTAATACTTGATAGGCGAAGGGAAAGAACATTCCCTCGAATGGTAAAACC AAGACCTCAACGATATGCCAGAAACAAGAATGCCATTCACCCTTAA
Upstream 100 bases:
>100_bases GATAAAGAAAAACGCCCAATATATGAGTAATGCCGATCATTTAAGGTAAATATGATCGGTTGACCGATCCTTTTTAGATG TCAAAATCCAAGTGTATTTT
Downstream 100 bases:
>100_bases GTGAACGGCATTACCCAATATATGAGCGTTTTATGTGAGGTGGGCTGTGATTTTATTATGTTGTATTTATGTTAATTGAT ACCAAGGTCTAAGGCATCGG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MHLDFFMDVSQALNIINDWKPSNVETLADLLPIHLIDEAYSLTDTVTMRKRKLTLESMVWLLVGMAIYNNKSMKDLVNQL DIVDRTGKAFVAPSALTQRRKNLGEAAMKAVFERMTSSWLKSANLPKWNGLTLLGVDGVVWRAPDNQKNEEAFSRQKGTQ YPQVRMVCQMELSSHLITASAFDNYNTNEMILAEKLIDSTPDHSVTMFDKGFYSLGLLHKWQMTGSERHWLIPLKKNTQY EIIRSLGRNDKLVILRSNPRARKLFSNLPETMTARLVTRKIKGKDYQVLTSMIDPLRYPLKDIVGLYEHRWEIELGYREQ KQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQ LKGFHQMAESLILDRRRERTFPRMVKPRPQRYARNKNAIHP
Sequences:
>Translated_441_residues MHLDFFMDVSQALNIINDWKPSNVETLADLLPIHLIDEAYSLTDTVTMRKRKLTLESMVWLLVGMAIYNNKSMKDLVNQL DIVDRTGKAFVAPSALTQRRKNLGEAAMKAVFERMTSSWLKSANLPKWNGLTLLGVDGVVWRAPDNQKNEEAFSRQKGTQ YPQVRMVCQMELSSHLITASAFDNYNTNEMILAEKLIDSTPDHSVTMFDKGFYSLGLLHKWQMTGSERHWLIPLKKNTQY EIIRSLGRNDKLVILRSNPRARKLFSNLPETMTARLVTRKIKGKDYQVLTSMIDPLRYPLKDIVGLYEHRWEIELGYREQ KQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQ LKGFHQMAESLILDRRRERTFPRMVKPRPQRYARNKNAIHP >Mature_441_residues MHLDFFMDVSQALNIINDWKPSNVETLADLLPIHLIDEAYSLTDTVTMRKRKLTLESMVWLLVGMAIYNNKSMKDLVNQL DIVDRTGKAFVAPSALTQRRKNLGEAAMKAVFERMTSSWLKSANLPKWNGLTLLGVDGVVWRAPDNQKNEEAFSRQKGTQ YPQVRMVCQMELSSHLITASAFDNYNTNEMILAEKLIDSTPDHSVTMFDKGFYSLGLLHKWQMTGSERHWLIPLKKNTQY EIIRSLGRNDKLVILRSNPRARKLFSNLPETMTARLVTRKIKGKDYQVLTSMIDPLRYPLKDIVGLYEHRWEIELGYREQ KQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVELCFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQ LKGFHQMAESLILDRRRERTFPRMVKPRPQRYARNKNAIHP
Specific function: Involved in the transposition of the insertion sequence IS4 [H]
COG id: COG3385
COG function: function code L; FOG: Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 11 family [H]
Homologues:
Organism=Escherichia coli, GI1790729, Length=432, Percent_Identity=48.3796296296296, Blast_Score=412, Evalue=1e-116,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 - InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 51146; Mature: 51146
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLDFFMDVSQALNIINDWKPSNVETLADLLPIHLIDEAYSLTDTVTMRKRKLTLESMVW CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGMAIYNNKSMKDLVNQLDIVDRTGKAFVAPSALTQRRKNLGEAAMKAVFERMTSSWL HHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSANLPKWNGLTLLGVDGVVWRAPDNQKNEEAFSRQKGTQYPQVRMVCQMELSSHLITAS HHCCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEH AFDNYNTNEMILAEKLIDSTPDHSVTMFDKGFYSLGLLHKWQMTGSERHWLIPLKKNTQY HCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHEEEECCCCCCEEEEEECCCCHH EIIRSLGRNDKLVILRSNPRARKLFSNLPETMTARLVTRKIKGKDYQVLTSMIDPLRYPL HHHHHHCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH KDIVGLYEHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVEL HHHHHHHHHCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQLKGFHQMAESLILDRRRERT HHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC FPRMVKPRPQRYARNKNAIHP CCHHCCCCHHHHHCCCCCCCC >Mature Secondary Structure MHLDFFMDVSQALNIINDWKPSNVETLADLLPIHLIDEAYSLTDTVTMRKRKLTLESMVW CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGMAIYNNKSMKDLVNQLDIVDRTGKAFVAPSALTQRRKNLGEAAMKAVFERMTSSWL HHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSANLPKWNGLTLLGVDGVVWRAPDNQKNEEAFSRQKGTQYPQVRMVCQMELSSHLITAS HHCCCCCCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEH AFDNYNTNEMILAEKLIDSTPDHSVTMFDKGFYSLGLLHKWQMTGSERHWLIPLKKNTQY HCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHEEEECCCCCCEEEEEECCCCHH EIIRSLGRNDKLVILRSNPRARKLFSNLPETMTARLVTRKIKGKDYQVLTSMIDPLRYPL HHHHHHCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH KDIVGLYEHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLIRYQMVEL HHHHHHHHHCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFNLKGNYLPYQLSFNGTLAHVSALLVGLPYSTPGAIPRQLKGFHQMAESLILDRRRERT HHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC FPRMVKPRPQRYARNKNAIHP CCHHCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6268937; 7610040; 9278503 [H]