| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is leuO [H]
Identifier: 209696155
GI number: 209696155
Start: 2977409
End: 2978383
Strand: Direct
Name: leuO [H]
Synonym: VSAL_I2749
Alternate gene names: 209696155
Gene position: 2977409-2978383 (Clockwise)
Preceding gene: 209696154
Following gene: 209696156
Centisome position: 89.54
GC content: 38.87
Gene sequence:
>975_bases ATGAGTATGTCTGAATTTTCCTCTGCATCTAATAGCGTTAGAGCAGAACAAGTATTACGTGGAGTAGATTTAAATCTACT GACTGTTTTTGATGCAGTAATGCAAGAGCAAAATATTACTCGAGCAGCTCAAAACCTAGGTATGTCACAACCGGCAGTGA GTAATGCGGTATCACGACTAAAAGTGATGTTTAATGATGAACTCTTTATTCGCCATGGTCGTGGTATTCAACCAACGCAA CGTGCTCGTCAATTATTCGCACCAATGCGTCAAGCACTGCAATTGGTAAAAAATGAATTACCAAGTTCGACGTTTATTCC TGAAACATCAATGAGACAATTTAAGCTCTCAATTTGTAGCCCTTCGGATATTCGTTTTGCTCCACGAATCATGAGAGATA TTCAGCAAAAATCGCCTCATATTAGTTTAAAGTTGTCTGGTGAACATGAAGCGGATATTGCTCAAAAGCTTCGTTATCAA GAAATTGACTTTGTGATTGATTATGTTCGTTTTGACGAACCTGGTTTTATGAGCACTGAGTTATTTACTGATGAATTAGT GGTTGTTGCTGCCGTTAATCACCCTCGAATTCAGGGTATGATTACTAAAGAGCAATTGGCAAATGAGAAACATGCTGTTC CTGCTCGTATTGAAAATACAAAAGGGTTTGCAGACCATTTATATCAAGATGCTATTTATGAGCAAGCTTACAAAGGGGCT AGCATCAGCAACATTCTTTATGTTGTTTCTCAATCAGAGTTGATTACGGTTGCTCCTAAGTGGTTGGTCAGTTCAATGCC AAACCGCGATCAACTGGCTATTCTTCCATTGCCAATTGAATCAAAAGGGATCAGTGGCTATTTAAGCTGGCATGACTCGT ACCAAAAAGACAAAGGTCATATTTGGATGCGTGATCAATTGATGCTTATTTGTGGCGAAGAAGTCGTTGCTTCAAGTAAA GGTATGATGTTTTAG
Upstream 100 bases:
>100_bases GGCTAGCATACGTTCTGTCAATAACGTGTATAACTATAATAATATGCAGCTTACTTTTTCTTATTTTAATAATTTGCTGA AAAATAGAGAGAGCCTTTAA
Downstream 100 bases:
>100_bases CGTTGAAATACTCTAAAATTAGAAGAATAAAAGGCAGCATCATTGATGTTGCCTTTTTTGTAGGATCTCATTCGATATAA ATGAAATGTATATTATTAAT
Product: leucine transcriptional activator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSMSEFSSASNSVRAEQVLRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQPAVSNAVSRLKVMFNDELFIRHGRGIQPTQ RARQLFAPMRQALQLVKNELPSSTFIPETSMRQFKLSICSPSDIRFAPRIMRDIQQKSPHISLKLSGEHEADIAQKLRYQ EIDFVIDYVRFDEPGFMSTELFTDELVVVAAVNHPRIQGMITKEQLANEKHAVPARIENTKGFADHLYQDAIYEQAYKGA SISNILYVVSQSELITVAPKWLVSSMPNRDQLAILPLPIESKGISGYLSWHDSYQKDKGHIWMRDQLMLICGEEVVASSK GMMF
Sequences:
>Translated_324_residues MSMSEFSSASNSVRAEQVLRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQPAVSNAVSRLKVMFNDELFIRHGRGIQPTQ RARQLFAPMRQALQLVKNELPSSTFIPETSMRQFKLSICSPSDIRFAPRIMRDIQQKSPHISLKLSGEHEADIAQKLRYQ EIDFVIDYVRFDEPGFMSTELFTDELVVVAAVNHPRIQGMITKEQLANEKHAVPARIENTKGFADHLYQDAIYEQAYKGA SISNILYVVSQSELITVAPKWLVSSMPNRDQLAILPLPIESKGISGYLSWHDSYQKDKGHIWMRDQLMLICGEEVVASSK GMMF >Mature_323_residues SMSEFSSASNSVRAEQVLRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQPAVSNAVSRLKVMFNDELFIRHGRGIQPTQR ARQLFAPMRQALQLVKNELPSSTFIPETSMRQFKLSICSPSDIRFAPRIMRDIQQKSPHISLKLSGEHEADIAQKLRYQE IDFVIDYVRFDEPGFMSTELFTDELVVVAAVNHPRIQGMITKEQLANEKHAVPARIENTKGFADHLYQDAIYEQAYKGAS ISNILYVVSQSELITVAPKWLVSSMPNRDQLAILPLPIESKGISGYLSWHDSYQKDKGHIWMRDQLMLICGEEVVASSKG MMF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87081684, Length=296, Percent_Identity=52.027027027027, Blast_Score=306, Evalue=2e-84, Organism=Escherichia coli, GI87081766, Length=267, Percent_Identity=26.2172284644195, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786820, Length=294, Percent_Identity=27.2108843537415, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI157672245, Length=293, Percent_Identity=24.5733788395904, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 36653; Mature: 36521
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMSEFSSASNSVRAEQVLRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQPAVSNAVSRL CCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KVMFNDELFIRHGRGIQPTQRARQLFAPMRQALQLVKNELPSSTFIPETSMRQFKLSICS HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEECC PSDIRFAPRIMRDIQQKSPHISLKLSGEHEADIAQKLRYQEIDFVIDYVRFDEPGFMSTE CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH LFTDELVVVAAVNHPRIQGMITKEQLANEKHAVPARIENTKGFADHLYQDAIYEQAYKGA HHHCCEEEEEECCCCHHEEEEEHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCC SISNILYVVSQSELITVAPKWLVSSMPNRDQLAILPLPIESKGISGYLSWHDSYQKDKGH CHHHEEEEEECCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCC IWMRDQLMLICGEEVVASSKGMMF EEEECCEEEEECHHHHHCCCCCCC >Mature Secondary Structure SMSEFSSASNSVRAEQVLRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQPAVSNAVSRL CCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KVMFNDELFIRHGRGIQPTQRARQLFAPMRQALQLVKNELPSSTFIPETSMRQFKLSICS HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEECC PSDIRFAPRIMRDIQQKSPHISLKLSGEHEADIAQKLRYQEIDFVIDYVRFDEPGFMSTE CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH LFTDELVVVAAVNHPRIQGMITKEQLANEKHAVPARIENTKGFADHLYQDAIYEQAYKGA HHHCCEEEEEECCCCHHEEEEEHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCC SISNILYVVSQSELITVAPKWLVSSMPNRDQLAILPLPIESKGISGYLSWHDSYQKDKGH CHHHEEEEEECCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCC IWMRDQLMLICGEEVVASSKGMMF EEEECCEEEEECHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3413113; 1630901; 9278503; 3519576 [H]