| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is damX [C]
Identifier: 209696130
GI number: 209696130
Start: 2950010
End: 2951527
Strand: Direct
Name: damX [C]
Synonym: VSAL_I2724
Alternate gene names: 209696130
Gene position: 2950010-2951527 (Clockwise)
Preceding gene: 209696129
Following gene: 209696131
Centisome position: 88.72
GC content: 37.22
Gene sequence:
>1518_bases ATGAATATTGGTCATGATTCAACTGTTTTAGAATTAGAAAGTCAGATTGATGTGTTATCTCGCATTCAGTTTGTTTCTCG TTTTGGTTCTAATTTGGTACATATTGAAGGAGTTAAAGGCTCTGGAAAGTCATGGCTATCTCAGCGTTATCTTGAAAAAT GGTGTGATGATGCAGATCAAGTACTATTGATGTGCCATACCAATCAATCAATATATCAACAGCGTGGGATCATTTTAAAA CAGATGGTTCGTGATCCGCTTTTTAATGAGCACGATACTGTTGTTGATAGTATTAGTCGGATGTTAGCGGGTGAAAAGTG CAACTTAGTTCTGGTTATTGATGACGCACATCTACTCTCTTCTGAGTTACTTAGTGAGTTGTGGTTACTGGTTCAAAAAG CACAGTCAGCGTCTAACTGGCAAATTAATGTGCTGCTTTTTGCTGATAAAGGAACGTTAACACAACCTTTATCGCAGATG TCTTATGGGCAGGACAGTAAACCGATTGATATTGATATTGAGTTATTGACGCAAGATGAAGCTGCAACGTTTTCTGAAAT GCTTGTGATTCGTTTTGCATCAAGCAAAGAAGAGAAAGCAAGAATTCGTCGCTTGGTGAATAAGAATAATAGATTGCCAG GGAAACTTATTATATTAGGTGAGAAAAAAGCAGAACGACGAGTAATTATTCGTTCAGTAGCGCAATCTCCCGTTGGTATT TTAAGTTTAGCGGCTATTTTACTTCTTGGTTCCGCAGGTGGTTATTGGTGGATGAATCAGTCATCGTTGCCTTCTATGAA CTCAATGCTTCATGATTCACTGAATCAATCATTAAATAATGACAGTTTAGTCTTAGATGCACTTAATAAAGAAAACTCAG AGCTTAACAGTATTAATCTGCCTGAAGATGATACACATACGATCCCTCCTGATGTGATTGATAAGCCGATAATTATTGAA TCAAGTAAAGAAGAAGGTAAGCGTGTTGTCGTCCCCTCTGAAGTGGTTGATGCTTTAGTCGGTGATTCTGAATCTTTGGA TGAATCGGCGTCATTAACGTCTTCTGCAGATGATATTCTTGCTACTCAAGAGACGGTAAATAAAGAAAATACGACATCAG TGTCTTCTAAAAAAGAAGATATGGCGAGTATTGTTAATGAGAGTAAGCCTTTAGTTGTCGAAAAAAATACAGACGTAGGC AAAGAACGTATTACGTTTACTTTGGCTAATTCTGAACTTAAAGCCATTTCTGAAAAGCGCTATATATTGCAATTAGCCGC TTTAACAAATGAAGAAGCAGTGCAAGAGTTCTTAGATGAACATCAACTTGGAAGTTCAGCTCGAATTTATCAAGCATTAA GAAATGGTTCGATTTGGTATATCGTGAGTTATGGTGATTATGTCTCCATTTCAAAAGCTCGTGGTGCGGTGAAGAATCTA CCAAATTCAGTTCAAACTCTGGGTCCTTGGGCAAAATCTTTAGTTCAAGTACATCGAGAAATTGATTCTTTAAAATAA
Upstream 100 bases:
>100_bases ACGTTTGGTACTCCCAACTTCAATTGGTAGCTCTGAGGTCGTAACAGGTGTTTCTGAGCGTGTTCTCGCTGATGTGATAG AGCAATGTAAGGCATAAACG
Downstream 100 bases:
>100_bases CACTGAGTATTGATTAAAAATAGGGTACAATCGCCCGCTTTCTGGATTAGGGTAAAAGGCTAAAAAGACGTATGAAAAAG CATCGCGCATTTCTTAAGTG
Product: cell division protein
Products: NA
Alternate protein names: DamX-Like Protein; Sporulation And Repeat Protein
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MNIGHDSTVLELESQIDVLSRIQFVSRFGSNLVHIEGVKGSGKSWLSQRYLEKWCDDADQVLLMCHTNQSIYQQRGIILK QMVRDPLFNEHDTVVDSISRMLAGEKCNLVLVIDDAHLLSSELLSELWLLVQKAQSASNWQINVLLFADKGTLTQPLSQM SYGQDSKPIDIDIELLTQDEAATFSEMLVIRFASSKEEKARIRRLVNKNNRLPGKLIILGEKKAERRVIIRSVAQSPVGI LSLAAILLLGSAGGYWWMNQSSLPSMNSMLHDSLNQSLNNDSLVLDALNKENSELNSINLPEDDTHTIPPDVIDKPIIIE SSKEEGKRVVVPSEVVDALVGDSESLDESASLTSSADDILATQETVNKENTTSVSSKKEDMASIVNESKPLVVEKNTDVG KERITFTLANSELKAISEKRYILQLAALTNEEAVQEFLDEHQLGSSARIYQALRNGSIWYIVSYGDYVSISKARGAVKNL PNSVQTLGPWAKSLVQVHREIDSLK
Sequences:
>Translated_505_residues MNIGHDSTVLELESQIDVLSRIQFVSRFGSNLVHIEGVKGSGKSWLSQRYLEKWCDDADQVLLMCHTNQSIYQQRGIILK QMVRDPLFNEHDTVVDSISRMLAGEKCNLVLVIDDAHLLSSELLSELWLLVQKAQSASNWQINVLLFADKGTLTQPLSQM SYGQDSKPIDIDIELLTQDEAATFSEMLVIRFASSKEEKARIRRLVNKNNRLPGKLIILGEKKAERRVIIRSVAQSPVGI LSLAAILLLGSAGGYWWMNQSSLPSMNSMLHDSLNQSLNNDSLVLDALNKENSELNSINLPEDDTHTIPPDVIDKPIIIE SSKEEGKRVVVPSEVVDALVGDSESLDESASLTSSADDILATQETVNKENTTSVSSKKEDMASIVNESKPLVVEKNTDVG KERITFTLANSELKAISEKRYILQLAALTNEEAVQEFLDEHQLGSSARIYQALRNGSIWYIVSYGDYVSISKARGAVKNL PNSVQTLGPWAKSLVQVHREIDSLK >Mature_505_residues MNIGHDSTVLELESQIDVLSRIQFVSRFGSNLVHIEGVKGSGKSWLSQRYLEKWCDDADQVLLMCHTNQSIYQQRGIILK QMVRDPLFNEHDTVVDSISRMLAGEKCNLVLVIDDAHLLSSELLSELWLLVQKAQSASNWQINVLLFADKGTLTQPLSQM SYGQDSKPIDIDIELLTQDEAATFSEMLVIRFASSKEEKARIRRLVNKNNRLPGKLIILGEKKAERRVIIRSVAQSPVGI LSLAAILLLGSAGGYWWMNQSSLPSMNSMLHDSLNQSLNNDSLVLDALNKENSELNSINLPEDDTHTIPPDVIDKPIIIE SSKEEGKRVVVPSEVVDALVGDSESLDESASLTSSADDILATQETVNKENTTSVSSKKEDMASIVNESKPLVVEKNTDVG KERITFTLANSELKAISEKRYILQLAALTNEEAVQEFLDEHQLGSSARIYQALRNGSIWYIVSYGDYVSISKARGAVKNL PNSVQTLGPWAKSLVQVHREIDSLK
Specific function: Directly Or Indirectly Interferes With Cell Division. [C]
COG id: COG3267
COG function: function code U; Type II secretory pathway, component ExeA (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56083; Mature: 56083
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIGHDSTVLELESQIDVLSRIQFVSRFGSNLVHIEGVKGSGKSWLSQRYLEKWCDDADQ CCCCCCCHHEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC VLLMCHTNQSIYQQRGIILKQMVRDPLFNEHDTVVDSISRMLAGEKCNLVLVIDDAHLLS EEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHH SELLSELWLLVQKAQSASNWQINVLLFADKGTLTQPLSQMSYGQDSKPIDIDIELLTQDE HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEEEEECCH AATFSEMLVIRFASSKEEKARIRRLVNKNNRLPGKLIILGEKKAERRVIIRSVAQSPVGI HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHH LSLAAILLLGSAGGYWWMNQSSLPSMNSMLHDSLNQSLNNDSLVLDALNKENSELNSINL HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC PEDDTHTIPPDVIDKPIIIESSKEEGKRVVVPSEVVDALVGDSESLDESASLTSSADDIL CCCCCCCCCHHHCCCCEEEECCCCCCCEEECCHHHHHHHHCCCCCCCCHHCCCCCHHHHH ATQETVNKENTTSVSSKKEDMASIVNESKPLVVEKNTDVGKERITFTLANSELKAISEKR HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHH YILQLAALTNEEAVQEFLDEHQLGSSARIYQALRNGSIWYIVSYGDYVSISKARGAVKNL HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHC PNSVQTLGPWAKSLVQVHREIDSLK CHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNIGHDSTVLELESQIDVLSRIQFVSRFGSNLVHIEGVKGSGKSWLSQRYLEKWCDDADQ CCCCCCCHHEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC VLLMCHTNQSIYQQRGIILKQMVRDPLFNEHDTVVDSISRMLAGEKCNLVLVIDDAHLLS EEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHH SELLSELWLLVQKAQSASNWQINVLLFADKGTLTQPLSQMSYGQDSKPIDIDIELLTQDE HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEEEEECCH AATFSEMLVIRFASSKEEKARIRRLVNKNNRLPGKLIILGEKKAERRVIIRSVAQSPVGI HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHH LSLAAILLLGSAGGYWWMNQSSLPSMNSMLHDSLNQSLNNDSLVLDALNKENSELNSINL HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC PEDDTHTIPPDVIDKPIIIESSKEEGKRVVVPSEVVDALVGDSESLDESASLTSSADDIL CCCCCCCCCHHHCCCCEEEECCCCCCCEEECCHHHHHHHHCCCCCCCCHHCCCCCHHHHH ATQETVNKENTTSVSSKKEDMASIVNESKPLVVEKNTDVGKERITFTLANSELKAISEKR HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHH YILQLAALTNEEAVQEFLDEHQLGSSARIYQALRNGSIWYIVSYGDYVSISKARGAVKNL HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHC PNSVQTLGPWAKSLVQVHREIDSLK CHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA