Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696089

Identifier: 209696089

GI number: 209696089

Start: 2903883

End: 2904563

Strand: Direct

Name: 209696089

Synonym: VSAL_I2681

Alternate gene names: NA

Gene position: 2903883-2904563 (Clockwise)

Preceding gene: 209696087

Following gene: 209696090

Centisome position: 87.33

GC content: 42.44

Gene sequence:

>681_bases
ATGCCAGTAAATACTATTATGGGGTTATTCGCAAAGTCCCCAATGAAACCTTTGCAGCGTCACGTTGTTTGTGTCAATGA
ATGCTGCTCACTGCTTATTCCGTTTTTCGAAACGTGTGCAACTGGTGATTGGGAAAAAGCGAATGAACTTCGTGCGCAAA
TTTCTCATCTTGAGAAAGAAGCGGATGTTCTGAAACGTGAAATTCGTTTAAAACTTCCTCGCGGGTTGTTTATGCCTGTT
GATCGTACCGATATGCTCGGCCTTCTGACTCAACAAGATAAACTCGCAAACTTGGCTAAAGATATCGCAGGTCGCGTTGT
CGGTCGTCAACTTGAAATTCCAACCTCTATGCAGGATGCATTTCTAGCTTATGTTCAGCGTTGTTTAGATGCGGCTAACC
AAGCCCAAGAAGTAATCAGCGAATTAGACGAACTGTTAGAAACCGGCTTTAAAGGACGTGAAGTCACCTTAGTTGCAGAA
ATGATCAACAAACTAGATATCATTGAAGATGATACTGATGATCTGCAGATTCAATTGCGTCAACAACTCATGGGCATCGA
GCACAAATACAACCCAATCGATGTTATGTTCCTTTATAAAATTCTTGAGTGGGTTGGTGGCATTGCCGACCAAGCACAAC
GTGTTGGTTCTCGTTTAGAACTGATGTTATCTCGCTCATAA

Upstream 100 bases:

>100_bases
AGTAGTTTTATTGATTGTGGGATTGGGTTAACATTCGCGCCTTTGTGGCCATCGTCTAACAATCCACCATTAGGTGGTTG
TTTTATTAGGTTAAGAAACC

Downstream 100 bases:

>100_bases
GTTTGTGATTCAGTAACAGGTACTACAATGGATATTCTTGCTAACTACGGCACGACCCTAATTATAGTTGCGGCCTTCTT
CGGTCTTCTAATGGCTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPVNTIMGLFAKSPMKPLQRHVVCVNECCSLLIPFFETCATGDWEKANELRAQISHLEKEADVLKREIRLKLPRGLFMPV
DRTDMLGLLTQQDKLANLAKDIAGRVVGRQLEIPTSMQDAFLAYVQRCLDAANQAQEVISELDELLETGFKGREVTLVAE
MINKLDIIEDDTDDLQIQLRQQLMGIEHKYNPIDVMFLYKILEWVGGIADQAQRVGSRLELMLSRS

Sequences:

>Translated_226_residues
MPVNTIMGLFAKSPMKPLQRHVVCVNECCSLLIPFFETCATGDWEKANELRAQISHLEKEADVLKREIRLKLPRGLFMPV
DRTDMLGLLTQQDKLANLAKDIAGRVVGRQLEIPTSMQDAFLAYVQRCLDAANQAQEVISELDELLETGFKGREVTLVAE
MINKLDIIEDDTDDLQIQLRQQLMGIEHKYNPIDVMFLYKILEWVGGIADQAQRVGSRLELMLSRS
>Mature_225_residues
PVNTIMGLFAKSPMKPLQRHVVCVNECCSLLIPFFETCATGDWEKANELRAQISHLEKEADVLKREIRLKLPRGLFMPVD
RTDMLGLLTQQDKLANLAKDIAGRVVGRQLEIPTSMQDAFLAYVQRCLDAANQAQEVISELDELLETGFKGREVTLVAEM
INKLDIIEDDTDDLQIQLRQQLMGIEHKYNPIDVMFLYKILEWVGGIADQAQRVGSRLELMLSRS

Specific function: Unknown

COG id: COG1392

COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0111 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002727
- InterPro:   IPR018445 [H]

Pfam domain/function: PF01865 PhoU_div [H]

EC number: NA

Molecular weight: Translated: 25658; Mature: 25527

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNTIMGLFAKSPMKPLQRHVVCVNECCSLLIPFFETCATGDWEKANELRAQISHLEKE
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ADVLKREIRLKLPRGLFMPVDRTDMLGLLTQQDKLANLAKDIAGRVVGRQLEIPTSMQDA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FLAYVQRCLDAANQAQEVISELDELLETGFKGREVTLVAEMINKLDIIEDDTDDLQIQLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
QQLMGIEHKYNPIDVMFLYKILEWVGGIADQAQRVGSRLELMLSRS
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVNTIMGLFAKSPMKPLQRHVVCVNECCSLLIPFFETCATGDWEKANELRAQISHLEKE
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ADVLKREIRLKLPRGLFMPVDRTDMLGLLTQQDKLANLAKDIAGRVVGRQLEIPTSMQDA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FLAYVQRCLDAANQAQEVISELDELLETGFKGREVTLVAEMINKLDIIEDDTDDLQIQLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
QQLMGIEHKYNPIDVMFLYKILEWVGGIADQAQRVGSRLELMLSRS
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]