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The map label for this gene is yhcM [H]

Identifier: 209696073

GI number: 209696073

Start: 2882194

End: 2883300

Strand: Reverse

Name: yhcM [H]

Synonym: VSAL_I2665

Alternate gene names: 209696073

Gene position: 2883300-2882194 (Counterclockwise)

Preceding gene: 209696077

Following gene: 209696072

Centisome position: 86.71

GC content: 39.39

Gene sequence:

>1107_bases
ATGACACCATTAGAAAAATACCAGCTTGACCTTACGCAAGATACATTTCATCACGACAGTGCTCAGCAACACGCCGTGGA
GTGTTTGGATGAGTTATATCATCGATTATTGCAACCAAAAACGACACCCAAAGCAGAACGAAAATCTTGGTTGTCTGTAT
TTAAAAAATCAGAACCTCAGACCGTCGTGCCAGAGAAAGGATTGTATTTTTGGGGAGGAGTGGGGAGAGGAAAAACGTAT
TTAGTCGATACTTTTTACGATGCCTTGCCTACTGAACGTAAAATGCGAGTGCACTTCCATCGGTTTATGCAGCGAGTTCA
TGATGAGCTTGGTGAGCTTCAACAACAAGCGGATCCATTGTTGATTGTGGCTGATAAATTTAAACAAGAAACCGATATTA
TCTGTTTTGATGAATTCTTTGTTTCTGATATTACCGATGCCATGATATTAGCGACATTATTAGAGGCGTTATTTGAACGA
GGTATTGCCCTTGTTGCGACATCAAATATTGTCCCTCAGGAGTTATACCGAAATGGATTGCAAAGGGCGCGTTTTATTCC
TGCTATTACGTTGATCGAACAACACTGCCAGATAGTTAATGTGGACAGTGGCATTGATTATCGTTTAAGGACGTTAGAGC
AAGCTGAAATCTATCATTTCCCTCTCGATAGTTTAGCTCAACAAAATATGTTGGATTATTTCCATCAGTTAACGTCAGAA
ACGGAACATGAAGAGAAAGAAATAGAAATTAATCATCGGATATTGTCCGTGAATGCCGAAGGGGATGGGGTTGTGCATTT
TGAATTCACTTCTCTATGTGAAAGTGCGCGCAGTCAACATGATTACATTGAATTGTCTCGTTTGTATCATACGGTTCTTC
TTTCTAACGTAAAGGTCATGGGAGAGCTCAATGATGATGCGGCTCGTCGTTTTATTGCCATGGTTGATGAGTTTTATGAG
CGAAACGTGAAATTAATCATTTCAGCGGAAGTCCAATTAGCTGATTTGTATCAAAATGGACGATTAACCTTTGAATTTAA
ACGTTGTCAGTCAAGGTTGATTGAAATGCAAAGTCATGAGTATCTAGCAAAAGAACATTTATCTTAG

Upstream 100 bases:

>100_bases
TGCATGAGTAGGCATAAATGTGAGTAAGCCCACTCATAGTGTTTATTGCGATCATGCTACTATGAACAGAGTGAATCAAC
AAAAGAAAAGATAAAAACTG

Downstream 100 bases:

>100_bases
TCGAAATGGGATGATTTTCTTTTGTTAACGTATTTATTTAGTGTGATAAGGCTCAAATTTCATTTTTTTTAATGTTTTTT
ACTGATATGTGAAAAATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTPLEKYQLDLTQDTFHHDSAQQHAVECLDELYHRLLQPKTTPKAERKSWLSVFKKSEPQTVVPEKGLYFWGGVGRGKTY
LVDTFYDALPTERKMRVHFHRFMQRVHDELGELQQQADPLLIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFER
GIALVATSNIVPQELYRNGLQRARFIPAITLIEQHCQIVNVDSGIDYRLRTLEQAEIYHFPLDSLAQQNMLDYFHQLTSE
TEHEEKEIEINHRILSVNAEGDGVVHFEFTSLCESARSQHDYIELSRLYHTVLLSNVKVMGELNDDAARRFIAMVDEFYE
RNVKLIISAEVQLADLYQNGRLTFEFKRCQSRLIEMQSHEYLAKEHLS

Sequences:

>Translated_368_residues
MTPLEKYQLDLTQDTFHHDSAQQHAVECLDELYHRLLQPKTTPKAERKSWLSVFKKSEPQTVVPEKGLYFWGGVGRGKTY
LVDTFYDALPTERKMRVHFHRFMQRVHDELGELQQQADPLLIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFER
GIALVATSNIVPQELYRNGLQRARFIPAITLIEQHCQIVNVDSGIDYRLRTLEQAEIYHFPLDSLAQQNMLDYFHQLTSE
TEHEEKEIEINHRILSVNAEGDGVVHFEFTSLCESARSQHDYIELSRLYHTVLLSNVKVMGELNDDAARRFIAMVDEFYE
RNVKLIISAEVQLADLYQNGRLTFEFKRCQSRLIEMQSHEYLAKEHLS
>Mature_367_residues
TPLEKYQLDLTQDTFHHDSAQQHAVECLDELYHRLLQPKTTPKAERKSWLSVFKKSEPQTVVPEKGLYFWGGVGRGKTYL
VDTFYDALPTERKMRVHFHRFMQRVHDELGELQQQADPLLIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFERG
IALVATSNIVPQELYRNGLQRARFIPAITLIEQHCQIVNVDSGIDYRLRTLEQAEIYHFPLDSLAQQNMLDYFHQLTSET
EHEEKEIEINHRILSVNAEGDGVVHFEFTSLCESARSQHDYIELSRLYHTVLLSNVKVMGELNDDAARRFIAMVDEFYER
NVKLIISAEVQLADLYQNGRLTFEFKRCQSRLIEMQSHEYLAKEHLS

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=32.7586206896552, Blast_Score=218, Evalue=9e-57,
Organism=Escherichia coli, GI1789627, Length=373, Percent_Identity=55.2278820375335, Blast_Score=412, Evalue=1e-116,
Organism=Caenorhabditis elegans, GI17505769, Length=353, Percent_Identity=34.5609065155807, Blast_Score=227, Evalue=8e-60,
Organism=Saccharomyces cerevisiae, GI6320783, Length=400, Percent_Identity=29.75, Blast_Score=168, Evalue=2e-42,
Organism=Drosophila melanogaster, GI20129913, Length=422, Percent_Identity=31.9905213270142, Blast_Score=191, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42931; Mature: 42800

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLEKYQLDLTQDTFHHDSAQQHAVECLDELYHRLLQPKTTPKAERKSWLSVFKKSEPQ
CCCCHHHEECCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
TVVPEKGLYFWGGVGRGKTYLVDTFYDALPTERKMRVHFHRFMQRVHDELGELQQQADPL
EECCCCCCEEECCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFERGIALVATSNIVPQELYRNGL
EEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
QRARFIPAITLIEQHCQIVNVDSGIDYRLRTLEQAEIYHFPLDSLAQQNMLDYFHQLTSE
HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCC
TEHEEKEIEINHRILSVNAEGDGVVHFEFTSLCESARSQHDYIELSRLYHTVLLSNVKVM
CCCHHHHEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
GELNDDAARRFIAMVDEFYERNVKLIISAEVQLADLYQNGRLTFEFKRCQSRLIEMQSHE
ECCCHHHHHHHHHHHHHHHHCCEEEEEEECEEEEHHHHCCCEEEEHHHHHHHHHHHHHHH
YLAKEHLS
HHHHHCCC
>Mature Secondary Structure 
TPLEKYQLDLTQDTFHHDSAQQHAVECLDELYHRLLQPKTTPKAERKSWLSVFKKSEPQ
CCCHHHEECCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
TVVPEKGLYFWGGVGRGKTYLVDTFYDALPTERKMRVHFHRFMQRVHDELGELQQQADPL
EECCCCCCEEECCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFERGIALVATSNIVPQELYRNGL
EEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
QRARFIPAITLIEQHCQIVNVDSGIDYRLRTLEQAEIYHFPLDSLAQQNMLDYFHQLTSE
HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCC
TEHEEKEIEINHRILSVNAEGDGVVHFEFTSLCESARSQHDYIELSRLYHTVLLSNVKVM
CCCHHHHEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
GELNDDAARRFIAMVDEFYERNVKLIISAEVQLADLYQNGRLTFEFKRCQSRLIEMQSHE
ECCCHHHHHHHHHHHHHHHHCCEEEEEEECEEEEHHHHCCCEEEEHHHHHHHHHHHHHHH
YLAKEHLS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]