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The map label for this gene is litR [H]

Identifier: 209696031

GI number: 209696031

Start: 2833164

End: 2833769

Strand: Direct

Name: litR [H]

Synonym: VSAL_I2619

Alternate gene names: 209696031

Gene position: 2833164-2833769 (Clockwise)

Preceding gene: 209696028

Following gene: 209696037

Centisome position: 85.2

GC content: 36.96

Gene sequence:

>606_bases
ATGGAAACGATCCAAAAAAGACCGAGAACTAGGCTATCTCCAGAGAAACGAAAAGAACAACTACTTGATATTGCGATTGA
GGTTTTTTCTCAACGTGGTATTGGTCGTGGCGGTCATGCAGATATAGCAGAAATTGCTCAAGTATCTGTTGCTACGGTAT
TTAATTACTTCCCAACCCGAGAAGATCTGGTTGATGATGTATTAAATCGAGTTGAACAACAATTTCATAACTTCATTCTC
AATTCAATCTCATTAGACCGAGATGTACGCTCCAATCTTCACTCTTTACTCGTGAACATCATAGATACAGTTCAAATGGA
TAATAAGTGGATTAAAGTGTGGTTTGAATGGAGCACCTCTACTCGCGAAGAAGTATGGCCTCTTTTCTTAAGCACTCAAG
TGAATAACCAAAAAGTTATTCATGATATGTTTGCTGAAGGGATTGAGCGTAACGAAGTATGTAATGATCATACCCCTGAA
AACTTAGCTAAAATGCTTCATGGGATTTGTTACTCTGTATTTATTCAAGCAAACCGTAATAGCTCTTATGAAGAACTAGA
ACAAACGGCAAATTGCTTTTTAAATATGCTGTGTATCTATAAGTAG

Upstream 100 bases:

>100_bases
CCGTAATAATTGTTGAATATATAAACAGCCTTATGTACAGTTATTGAGAATAATAATACCCCTATAAAAAATAATAATTT
GTTGGCAAGGATATAATAAA

Downstream 100 bases:

>100_bases
AGTAAGCGTGCGGGGAACTACACCTTGTCTTTTACATTCCAAGGTAAAAGTGAATCGATATCTGGCGATCCAACACATAA
ACGATCTAGACAATACCTAA

Product: LitR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNRVEQQFHNFIL
NSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTSTREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPE
NLAKMLHGICYSVFIQANRNSSYEELEQTANCFLNMLCIYK

Sequences:

>Translated_201_residues
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNRVEQQFHNFIL
NSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTSTREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPE
NLAKMLHGICYSVFIQANRNSSYEELEQTANCFLNMLCIYK
>Mature_201_residues
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNRVEQQFHNFIL
NSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTSTREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPE
NLAKMLHGICYSVFIQANRNSSYEELEQTANCFLNMLCIYK

Specific function: Regulatory protein of bacterial bioluminescence. It probably binds the autoinducer molecule and potentiates the transcription of the bioluminescence operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23462; Mature: 23462

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTR
CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
EDLVDDVLNRVEQQFHNFILNSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
TREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPENLAKMLHGICYSVFIQANRN
CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSYEELEQTANCFLNMLCIYK
CCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTR
CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
EDLVDDVLNRVEQQFHNFILNSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
TREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPENLAKMLHGICYSVFIQANRN
CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSYEELEQTANCFLNMLCIYK
CCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2160932; 8344950 [H]