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The map label for this gene is yebA [H]

Identifier: 209695985

GI number: 209695985

Start: 2760222

End: 2761532

Strand: Direct

Name: yebA [H]

Synonym: VSAL_I2568

Alternate gene names: 209695985

Gene position: 2760222-2761532 (Clockwise)

Preceding gene: 209695984

Following gene: 209695989

Centisome position: 83.01

GC content: 38.6

Gene sequence:

>1311_bases
ATGATATTATCTAAATTAACTCGTATTCCCGTGATTCATCGCATTCTTATCGGTCTCTGCAGTGCAGGAGTCGTTGCAGC
GATTGCAACTATTCCAGGCTCTGTGGCTCCTGATTCTGGCTTTTATAAATTAAACGTTGGTCAAACTTACCCCACAGAAA
TCCGTCAAGAAGCCCTGATCTCTCATGAACAATCAGGTAAAAACCAACAACTGATTTGGGAAACTTACACAGTAAAATCA
GGTGAAAGTGCCTCTGTATTATTCAACCGAGTCGGATTAAGCGCCCGTCAATTATATAATCTAACCAGTAGCGACAAAGA
AATAGAAACACAACTGACTCGCTTACGACCTGGTGATAAACTTAAATTTGGTTTTAATCAAAATCAAGAAATCATCCAAC
TGATCCGTCCAATAAGTCAATTTGAAACCTACCGTATTAGTAAAGTAGGCGATGGTTACTTAGGGTTACTTGAAAAACAA
GAAATTGAAACTCAACTGAATTATACCAAAGCAACGATTACTTCCAATTTCTGGAATGCTTCTATTACTGCAGGGTTAAA
CCCGAATCAGATAATGGAACTAGCGGGGATTTTTGGTTGGGATATTGATTTTGCATTAGATATTCGTGCTGGTGATACCT
TCACTGTACTTTATGAAGAGAAGTACAGTAAAGGTGAATATGCAGGTAAAGGAAATATTATAGCGACCACTTTCACTAAC
CGTGGCGACACGTTTACCGCAATTCGTAATGATAAAAATGGAAATTTTTACGAACCTAATGGTCGAGCGATGAAAAAAGC
ATTTTTACGCTCTCCAATTAATTTTCGTTATGTTAGTTCTAATTTTAATCCACGTCGTCTTCATCCAGTAACAGGACAAA
GAACCGCACATCGAGGGACTGATTATGTTGCCCCTGTAGGAACGCCTATTTGGGCTGCCGGTGATGGTGTCGTAGATAAA
TCAGGATATAACCAGTTTAATGGTAACTATGTATTCATTCGTCATAGTAATACTTACATTACAAAATATTTACACATGAC
TAAACGCTATGTAAAAGCAGGACAGCGAGTAAAACAAGGTGATACCGTAGGTACGCTTGGTGGAACTGGCCGAGTGACCG
GCCCTCACTTACACTATGAATTTTTAGTCAATGGCGTTCATAAAGACTCAAGAACCGTTTCTTTACCCCAATCTAAATCG
CTAACAGGTAAAGATAAAAAAGAGTTTGAAGTTGTCGCAAAACAGCGATTAAAAGAGTTAAACCAATACAGTCAATTTAT
TGTAGGTACTCATCCGGTACTCACTCACTAA

Upstream 100 bases:

>100_bases
TGACCAAGCTTTAACTATAACCTCCGCTCATGGCAGTAAAGCGAAAAACAAGCTAAACTTCTATGTTGTTATTTGTATTC
AATATTTACTACTTAATCGA

Downstream 100 bases:

>100_bases
TATCAATAATAAAGCTCTAGTTATAAAGACTAGGGCTTTTTCTTTCACTAATATCTTTAACCACTCCTACGTTATCTCTT
CCTAGCATTAATAAGCATGG

Product: membrane associated peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MILSKLTRIPVIHRILIGLCSAGVVAAIATIPGSVAPDSGFYKLNVGQTYPTEIRQEALISHEQSGKNQQLIWETYTVKS
GESASVLFNRVGLSARQLYNLTSSDKEIETQLTRLRPGDKLKFGFNQNQEIIQLIRPISQFETYRISKVGDGYLGLLEKQ
EIETQLNYTKATITSNFWNASITAGLNPNQIMELAGIFGWDIDFALDIRAGDTFTVLYEEKYSKGEYAGKGNIIATTFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRTAHRGTDYVAPVGTPIWAAGDGVVDK
SGYNQFNGNYVFIRHSNTYITKYLHMTKRYVKAGQRVKQGDTVGTLGGTGRVTGPHLHYEFLVNGVHKDSRTVSLPQSKS
LTGKDKKEFEVVAKQRLKELNQYSQFIVGTHPVLTH

Sequences:

>Translated_436_residues
MILSKLTRIPVIHRILIGLCSAGVVAAIATIPGSVAPDSGFYKLNVGQTYPTEIRQEALISHEQSGKNQQLIWETYTVKS
GESASVLFNRVGLSARQLYNLTSSDKEIETQLTRLRPGDKLKFGFNQNQEIIQLIRPISQFETYRISKVGDGYLGLLEKQ
EIETQLNYTKATITSNFWNASITAGLNPNQIMELAGIFGWDIDFALDIRAGDTFTVLYEEKYSKGEYAGKGNIIATTFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRTAHRGTDYVAPVGTPIWAAGDGVVDK
SGYNQFNGNYVFIRHSNTYITKYLHMTKRYVKAGQRVKQGDTVGTLGGTGRVTGPHLHYEFLVNGVHKDSRTVSLPQSKS
LTGKDKKEFEVVAKQRLKELNQYSQFIVGTHPVLTH
>Mature_436_residues
MILSKLTRIPVIHRILIGLCSAGVVAAIATIPGSVAPDSGFYKLNVGQTYPTEIRQEALISHEQSGKNQQLIWETYTVKS
GESASVLFNRVGLSARQLYNLTSSDKEIETQLTRLRPGDKLKFGFNQNQEIIQLIRPISQFETYRISKVGDGYLGLLEKQ
EIETQLNYTKATITSNFWNASITAGLNPNQIMELAGIFGWDIDFALDIRAGDTFTVLYEEKYSKGEYAGKGNIIATTFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRTAHRGTDYVAPVGTPIWAAGDGVVDK
SGYNQFNGNYVFIRHSNTYITKYLHMTKRYVKAGQRVKQGDTVGTLGGTGRVTGPHLHYEFLVNGVHKDSRTVSLPQSKS
LTGKDKKEFEVVAKQRLKELNQYSQFIVGTHPVLTH

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=347, Percent_Identity=34.8703170028818, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48775; Mature: 48775

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSKLTRIPVIHRILIGLCSAGVVAAIATIPGSVAPDSGFYKLNVGQTYPTEIRQEALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
SHEQSGKNQQLIWETYTVKSGESASVLFNRVGLSARQLYNLTSSDKEIETQLTRLRPGDK
HHHCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCCCCE
LKFGFNQNQEIIQLIRPISQFETYRISKVGDGYLGLLEKQEIETQLNYTKATITSNFWNA
EEECCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCC
SITAGLNPNQIMELAGIFGWDIDFALDIRAGDTFTVLYEEKYSKGEYAGKGNIIATTFTN
EEECCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEECC
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRTAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHCCCCCEEEEECCCCCCEECCCCCCCCCCCCC
DYVAPVGTPIWAAGDGVVDKSGYNQFNGNYVFIRHSNTYITKYLHMTKRYVKAGQRVKQG
CEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCC
DTVGTLGGTGRVTGPHLHYEFLVNGVHKDSRTVSLPQSKSLTGKDKKEFEVVAKQRLKEL
CCEEECCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
NQYSQFIVGTHPVLTH
HHHHHHEECCCCCCCC
>Mature Secondary Structure
MILSKLTRIPVIHRILIGLCSAGVVAAIATIPGSVAPDSGFYKLNVGQTYPTEIRQEALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
SHEQSGKNQQLIWETYTVKSGESASVLFNRVGLSARQLYNLTSSDKEIETQLTRLRPGDK
HHHCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCCCCE
LKFGFNQNQEIIQLIRPISQFETYRISKVGDGYLGLLEKQEIETQLNYTKATITSNFWNA
EEECCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCC
SITAGLNPNQIMELAGIFGWDIDFALDIRAGDTFTVLYEEKYSKGEYAGKGNIIATTFTN
EEECCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEECC
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRTAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHCCCCCEEEEECCCCCCEECCCCCCCCCCCCC
DYVAPVGTPIWAAGDGVVDKSGYNQFNGNYVFIRHSNTYITKYLHMTKRYVKAGQRVKQG
CEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCC
DTVGTLGGTGRVTGPHLHYEFLVNGVHKDSRTVSLPQSKSLTGKDKKEFEVVAKQRLKEL
CCEEECCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
NQYSQFIVGTHPVLTH
HHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]