| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695808
Identifier: 209695808
GI number: 209695808
Start: 2552815
End: 2553042
Strand: Reverse
Name: 209695808
Synonym: VSAL_I2383
Alternate gene names: NA
Gene position: 2553042-2552815 (Counterclockwise)
Preceding gene: 209695812
Following gene: 209695807
Centisome position: 76.78
GC content: 37.72
Gene sequence:
>228_bases ATGGAAACCCAACACTTAGATTTATCAAAACACCGTTGTCCTATGTCTTTATTATTGGCTAAGCGTGCAAGTCACCGCTT AATAGACAGCGAAAAATTAATCATTAAAGTCGTCGACAAAGTGTCTTTACAGGATATGATGACATACTTTCAGCAATCCT CTTTCCATACTCATCTAGAGCAAGCTGAACCGTGTTCTTTTTTAACCGTAACGAGAAGCAGAACTTAA
Upstream 100 bases:
>100_bases ATAAGAGTAGCAAATCTGTTATTGGTTTCTTTTCTGTCATAATTATGTGACTTATACTCTCTATACATGGAATCTATCAT ATCTATAGTCGAGTCGTCGA
Downstream 100 bases:
>100_bases TATGTTAGACATGGTTACTCAATGGTATAAACGTCGTTTTTCCGATCCTCATGCTGTTAGCTTAGTGGCAATATTAGTCG TCGGGTTTATTACTATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 75; Mature: 75
Protein sequence:
>75_residues METQHLDLSKHRCPMSLLLAKRASHRLIDSEKLIIKVVDKVSLQDMMTYFQQSSFHTHLEQAEPCSFLTVTRSRT
Sequences:
>Translated_75_residues METQHLDLSKHRCPMSLLLAKRASHRLIDSEKLIIKVVDKVSLQDMMTYFQQSSFHTHLEQAEPCSFLTVTRSRT >Mature_75_residues METQHLDLSKHRCPMSLLLAKRASHRLIDSEKLIIKVVDKVSLQDMMTYFQQSSFHTHLEQAEPCSFLTVTRSRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8744; Mature: 8744
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METQHLDLSKHRCPMSLLLAKRASHRLIDSEKLIIKVVDKVSLQDMMTYFQQSSFHTHLE CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHC QAEPCSFLTVTRSRT CCCCCCEEEEECCCC >Mature Secondary Structure METQHLDLSKHRCPMSLLLAKRASHRLIDSEKLIIKVVDKVSLQDMMTYFQQSSFHTHLE CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHC QAEPCSFLTVTRSRT CCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA