Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695789

Identifier: 209695789

GI number: 209695789

Start: 2537072

End: 2537428

Strand: Direct

Name: 209695789

Synonym: VSAL_I2363

Alternate gene names: NA

Gene position: 2537072-2537428 (Clockwise)

Preceding gene: 209695785

Following gene: 209695794

Centisome position: 76.3

GC content: 32.49

Gene sequence:

>357_bases
ATGATCAAAAATAAAAAAGAACCAATCTCAGTTGAAACTCAACAAGAAGCAATGAAGGTAGCTAAAGCTACACAAAAACC
AGCACAAACAAAAGAACAAACCAAACTCATTGCACAAGGTATTGAGAAAGGGATCACGCTTTACAAAAAACAACATAAAG
AAAAAGCACGTGAAGCGGATAAAACAAGGAAAAAAGAAGTTCGACAAAAGCAATTAAATGAATCTAATTCAAACAAAGAA
GAAGACAAAAAAGAACACCAAAATAAAACCAATACTCAATCCAATAAACCGTTACCGTGGATATTATTAGGCCTTAGTTG
GGTGGGGTTTATTTACTACTTCTTTTTAGGTTATTAA

Upstream 100 bases:

>100_bases
CAATCTATAAATCAAAAGCTCTATTCTCATCACATTTTTCTAAGTGTAGACTTTCAAAATATGTAAAAATGCCGTTAATT
ATTAATAATAAAGACATATT

Downstream 100 bases:

>100_bases
TTGATGAGTCTTAAACAAAAAAAGAGATGAGCCATAAGGGTCATCTCTTTTTTATTAGTTATCTATAGTGGTTACTTATC
TACTTTTAAAGATAAAATCC

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MIKNKKEPISVETQQEAMKVAKATQKPAQTKEQTKLIAQGIEKGITLYKKQHKEKAREADKTRKKEVRQKQLNESNSNKE
EDKKEHQNKTNTQSNKPLPWILLGLSWVGFIYYFFLGY

Sequences:

>Translated_118_residues
MIKNKKEPISVETQQEAMKVAKATQKPAQTKEQTKLIAQGIEKGITLYKKQHKEKAREADKTRKKEVRQKQLNESNSNKE
EDKKEHQNKTNTQSNKPLPWILLGLSWVGFIYYFFLGY
>Mature_118_residues
MIKNKKEPISVETQQEAMKVAKATQKPAQTKEQTKLIAQGIEKGITLYKKQHKEKAREADKTRKKEVRQKQLNESNSNKE
EDKKEHQNKTNTQSNKPLPWILLGLSWVGFIYYFFLGY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13807; Mature: 13807

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNKKEPISVETQQEAMKVAKATQKPAQTKEQTKLIAQGIEKGITLYKKQHKEKAREAD
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRKKEVRQKQLNESNSNKEEDKKEHQNKTNTQSNKPLPWILLGLSWVGFIYYFFLGY
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKNKKEPISVETQQEAMKVAKATQKPAQTKEQTKLIAQGIEKGITLYKKQHKEKAREAD
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTRKKEVRQKQLNESNSNKEEDKKEHQNKTNTQSNKPLPWILLGLSWVGFIYYFFLGY
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA