Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695726

Identifier: 209695726

GI number: 209695726

Start: 2468734

End: 2469408

Strand: Direct

Name: 209695726

Synonym: VSAL_I2294

Alternate gene names: NA

Gene position: 2468734-2469408 (Clockwise)

Preceding gene: 209695703

Following gene: 209695750

Centisome position: 74.24

GC content: 40.74

Gene sequence:

>675_bases
ATGACTGGTGTTTCTCTAAGCACGAATCAAAATGTACTAAATAAAATGGATATTGGAGGAAGAGTGATCATTGAGGTGAG
CTGCCCAAATGGGCAATCCGCTCAAGCCACCTCGACGTTAATTGGGTTTAAAAAAGGCCAATACATCTTTATTGAATACC
CTTCATCAACCTCTTTAGAATTTAATAAGATTTATTTGGAAGGCGCGGAAGTCACCTTTAGAGCAATGACAAACACCACA
TTGCGTGATGTTATTGCGTTTCGAACACAGATCCACTCCGTTATTTATCGTCCAATGGAAATGCTTTGTCTGCATGCACC
AAAAAGTATCTCGATGAGACAAATACGTACACATCAGCGTATTGAAACCGAATTTGAGTGTGAACTTACGGTTGGTAACC
ATGTACTGTCAGGTAAGATAAGTGACTTTTCAGCAGGAGGGTGTGCGGTACTCTTTCCGTCAAAATTAAATCCAGACAAT
CTTCTTAATCAACCCGTTAGTGTCTCGATTCAATTAGATACGTTAGAGCCGATCCTCATTAAAGGGAAGATAAAGAATAT
AGACGCGAAGGAGAAAAAGTCGAAAGTGGGCGTGATGTTCAATGCGGATAGCATTACTGATTCCGATCTTCAGACCCTTC
ATCACCAATGCGTATTAAAAGGGTGGGAGTTGTAG

Upstream 100 bases:

>100_bases
TTCTTAAGGAAAAATAGTAAACACGATTGAAAAATAACTCTTCCTTTGTATAATCATCGCTCCACTCTTTGTCTAATGAC
ATCTCTATCAGGTAAATAGC

Downstream 100 bases:

>100_bases
ACCTCCTCCCCTTGTTATTTTTTCAAATCATCTGGGATGGTTAGTGAATCATCATCTAGCTCAGGTTTCGTTCCACCGCG
CTTTTTATACTGCTTCATTT

Product: type IV pilus assembly (PilZ) protein

Products: NA

Alternate protein names: Type IV Pilus Assembly Protein PilZ; Glycosyltransferase; Type IV Pilus Assembly Protein

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTGVSLSTNQNVLNKMDIGGRVIIEVSCPNGQSAQATSTLIGFKKGQYIFIEYPSSTSLEFNKIYLEGAEVTFRAMTNTT
LRDVIAFRTQIHSVIYRPMEMLCLHAPKSISMRQIRTHQRIETEFECELTVGNHVLSGKISDFSAGGCAVLFPSKLNPDN
LLNQPVSVSIQLDTLEPILIKGKIKNIDAKEKKSKVGVMFNADSITDSDLQTLHHQCVLKGWEL

Sequences:

>Translated_224_residues
MTGVSLSTNQNVLNKMDIGGRVIIEVSCPNGQSAQATSTLIGFKKGQYIFIEYPSSTSLEFNKIYLEGAEVTFRAMTNTT
LRDVIAFRTQIHSVIYRPMEMLCLHAPKSISMRQIRTHQRIETEFECELTVGNHVLSGKISDFSAGGCAVLFPSKLNPDN
LLNQPVSVSIQLDTLEPILIKGKIKNIDAKEKKSKVGVMFNADSITDSDLQTLHHQCVLKGWEL
>Mature_223_residues
TGVSLSTNQNVLNKMDIGGRVIIEVSCPNGQSAQATSTLIGFKKGQYIFIEYPSSTSLEFNKIYLEGAEVTFRAMTNTTL
RDVIAFRTQIHSVIYRPMEMLCLHAPKSISMRQIRTHQRIETEFECELTVGNHVLSGKISDFSAGGCAVLFPSKLNPDNL
LNQPVSVSIQLDTLEPILIKGKIKNIDAKEKKSKVGVMFNADSITDSDLQTLHHQCVLKGWEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24876; Mature: 24745

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVSLSTNQNVLNKMDIGGRVIIEVSCPNGQSAQATSTLIGFKKGQYIFIEYPSSTSLE
CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHEEEECCCCEEEEECCCCCCEE
FNKIYLEGAEVTFRAMTNTTLRDVIAFRTQIHSVIYRPMEMLCLHAPKSISMRQIRTHQR
EEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IETEFECELTVGNHVLSGKISDFSAGGCAVLFPSKLNPDNLLNQPVSVSIQLDTLEPILI
CCCEEEEEEEECCEEEECCCCCCCCCCEEEEECCCCCHHHHHCCCEEEEEEEECCCEEEE
KGKIKNIDAKEKKSKVGVMFNADSITDSDLQTLHHQCVLKGWEL
EEEECCCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TGVSLSTNQNVLNKMDIGGRVIIEVSCPNGQSAQATSTLIGFKKGQYIFIEYPSSTSLE
CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHEEEECCCCEEEEECCCCCCEE
FNKIYLEGAEVTFRAMTNTTLRDVIAFRTQIHSVIYRPMEMLCLHAPKSISMRQIRTHQR
EEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IETEFECELTVGNHVLSGKISDFSAGGCAVLFPSKLNPDNLLNQPVSVSIQLDTLEPILI
CCCEEEEEEEECCEEEECCCCCCCCCCEEEEECCCCCHHHHHCCCEEEEEEEECCCEEEE
KGKIKNIDAKEKKSKVGVMFNADSITDSDLQTLHHQCVLKGWEL
EEEECCCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA