| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is cheB [H]
Identifier: 209695718
GI number: 209695718
Start: 2458713
End: 2459855
Strand: Reverse
Name: cheB [H]
Synonym: VSAL_I2286
Alternate gene names: 209695718
Gene position: 2459855-2458713 (Counterclockwise)
Preceding gene: 209695719
Following gene: 209695717
Centisome position: 73.98
GC content: 43.74
Gene sequence:
>1143_bases ATGGCAATAAAAGTATTAGTTGTTGATGATTCAAGCTTTTTTCGACGTCGAGTGAGTGAAATTATCAACTCAGATCCACG CCTTGAAGTCATCGATGTAGCAACAAACGGCAAAGAAGCCGTTGAAAAAGCACAATCTTTAAAGCCAGATGTTATCACCA TGGATATAGAGATGCCTGTTATGGACGGTATCTCAGCAGTTCGAGAAATCATGAAAGTGTGCCCAACACCAACTTTGATG TTTTCTTCGTTAACTCATGATGGTGCAAAAGCGACATTAGATGCGTTAGATGCGGGTGCATTGGATTTCTTACCAAAGAA ATTTGAAGATATCGCCCGTAATCGTGATGAGGCGGTTTCATTGCTTCAACAGCGCATTGTTGAGATTGCACGTAAGAAAT TGTTTATGCGTCGACCTGCTTTAGCTACTCAAGTGACTAAAACTGAGCCTAGAGCAGCGGCAACAACAAGAGTAACTGCG TCACGAATTACATCGCCAATGAGCGCTGAACCAGTAAAAGCAGTGCCAAGTGCACCTATTGGTCAACGCTTTAAAGCAAC GGGTAAAAAATATCAGCTAACCGCAATAGGGACTTCAACCGGAGGCCCTGTGGCATTACAAAAGATATTAACGGCACTTC CTGCTAATTACCCACATCCGATTATTTTAGTTCAGCATATGCCAGCAACGTTTACTGCTGCGTTTGCCGCTCGATTAAAT AACTTATGTAAGATCCAAGTGAAAGAAGCGCAAGATGGCGATATTTTAAAGCCGGGTTGTGCGTATTTGGCTCCAGGTGG CTTACAAATGATGATTGATGGTCGTCCTGGTTCTTCTCGTTTGAAGATCCTTGATGGTGGTGAACGCATGAATTACAAAC CATGTGTTGATGTGACTTTTGGCTCCGCCGCGAAAGTGTATGGCGATAAAGTATTGTCTATGATCTTAACGGGTATGGGA GCGGATGGTCGTGAAGGCTGTCGTATGCTTAAAGCTGCTGGCGCAACCATTTGGTCTCAAGATGAGCAAAGTTGTGTTGT CTATGGCATGCCACAAGCCGTCGATAAAGCCGGTTTGTCTTCAGAAAGTTTGCCGATAGAACGTGTCGCTGAACGAATGC TTGTTGAAGTTGGATTAAAGTAG
Upstream 100 bases:
>100_bases TGCAACCATCACTTCAGATGGTCACATCGCACTTATTCTTGATGTTCCAAACTTGCTTAAGCGTTATGCAGTACGTATGC ATTAATGCACAAGGATTGAC
Downstream 100 bases:
>100_bases GAAAACCGAATGATTGTCTGGAGCATAGCAAACCAGAAAGGTGGTGTGGGTAAAACAACCACAACAATTACACTGGCTGG TTTATTAAATGAACGTGGTA
Product: chemotaxis-specific methylesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MAIKVLVVDDSSFFRRRVSEIINSDPRLEVIDVATNGKEAVEKAQSLKPDVITMDIEMPVMDGISAVREIMKVCPTPTLM FSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQQRIVEIARKKLFMRRPALATQVTKTEPRAAATTRVTA SRITSPMSAEPVKAVPSAPIGQRFKATGKKYQLTAIGTSTGGPVALQKILTALPANYPHPIILVQHMPATFTAAFAARLN NLCKIQVKEAQDGDILKPGCAYLAPGGLQMMIDGRPGSSRLKILDGGERMNYKPCVDVTFGSAAKVYGDKVLSMILTGMG ADGREGCRMLKAAGATIWSQDEQSCVVYGMPQAVDKAGLSSESLPIERVAERMLVEVGLK
Sequences:
>Translated_380_residues MAIKVLVVDDSSFFRRRVSEIINSDPRLEVIDVATNGKEAVEKAQSLKPDVITMDIEMPVMDGISAVREIMKVCPTPTLM FSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQQRIVEIARKKLFMRRPALATQVTKTEPRAAATTRVTA SRITSPMSAEPVKAVPSAPIGQRFKATGKKYQLTAIGTSTGGPVALQKILTALPANYPHPIILVQHMPATFTAAFAARLN NLCKIQVKEAQDGDILKPGCAYLAPGGLQMMIDGRPGSSRLKILDGGERMNYKPCVDVTFGSAAKVYGDKVLSMILTGMG ADGREGCRMLKAAGATIWSQDEQSCVVYGMPQAVDKAGLSSESLPIERVAERMLVEVGLK >Mature_379_residues AIKVLVVDDSSFFRRRVSEIINSDPRLEVIDVATNGKEAVEKAQSLKPDVITMDIEMPVMDGISAVREIMKVCPTPTLMF SSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQQRIVEIARKKLFMRRPALATQVTKTEPRAAATTRVTAS RITSPMSAEPVKAVPSAPIGQRFKATGKKYQLTAIGTSTGGPVALQKILTALPANYPHPIILVQHMPATFTAAFAARLNN LCKIQVKEAQDGDILKPGCAYLAPGGLQMMIDGRPGSSRLKILDGGERMNYKPCVDVTFGSAAKVYGDKVLSMILTGMGA DGREGCRMLKAAGATIWSQDEQSCVVYGMPQAVDKAGLSSESLPIERVAERMLVEVGLK
Specific function: Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR [H]
COG id: COG2201
COG function: function code NT; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788192, Length=375, Percent_Identity=35.7333333333333, Blast_Score=224, Evalue=7e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR008248 - InterPro: IPR000673 - InterPro: IPR001789 [H]
Pfam domain/function: PF01339 CheB_methylest; PF00072 Response_reg [H]
EC number: =3.1.1.61 [H]
Molecular weight: Translated: 40959; Mature: 40828
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50122 CHEB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKVLVVDDSSFFRRRVSEIINSDPRLEVIDVATNGKEAVEKAQSLKPDVITMDIEMPV CEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCH MDGISAVREIMKVCPTPTLMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVS HHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH LLQQRIVEIARKKLFMRRPALATQVTKTEPRAAATTRVTASRITSPMSAEPVKAVPSAPI HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GQRFKATGKKYQLTAIGTSTGGPVALQKILTALPANYPHPIILVQHMPATFTAAFAARLN CCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHC NLCKIQVKEAQDGDILKPGCAYLAPGGLQMMIDGRPGSSRLKILDGGERMNYKPCVDVTF CEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEC GSAAKVYGDKVLSMILTGMGADGREGCRMLKAAGATIWSQDEQSCVVYGMPQAVDKAGLS CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCHHHHHCCCC SESLPIERVAERMLVEVGLK CCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure AIKVLVVDDSSFFRRRVSEIINSDPRLEVIDVATNGKEAVEKAQSLKPDVITMDIEMPV EEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCH MDGISAVREIMKVCPTPTLMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVS HHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH LLQQRIVEIARKKLFMRRPALATQVTKTEPRAAATTRVTASRITSPMSAEPVKAVPSAPI HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GQRFKATGKKYQLTAIGTSTGGPVALQKILTALPANYPHPIILVQHMPATFTAAFAARLN CCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHC NLCKIQVKEAQDGDILKPGCAYLAPGGLQMMIDGRPGSSRLKILDGGERMNYKPCVDVTF CEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEC GSAAKVYGDKVLSMILTGMGADGREGCRMLKAAGATIWSQDEQSCVVYGMPQAVDKAGLS CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCHHHHHCCCC SESLPIERVAERMLVEVGLK CCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA