BacMap

Definition	Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession	NC_011312
Length	3,325,165

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The map label for this gene is 209695690

Identifier: 209695690

GI number: 209695690

Start: 2424041

End: 2425507

Strand: Reverse

Name: 209695690

Synonym: VSAL_I2254

Alternate gene names: NA

Gene position: 2425507-2424041 (Counterclockwise)

Preceding gene: 209695691

Following gene: 209695689

Centisome position: 72.94

GC content: 38.65

Gene sequence:

>1467_bases
ATGAAGCGTGAACAATGGGGTTCTCGAGCAGGATTTATTCTTGCCGCAGTAGGTTCTGCTATCGGATTAGGTAATATTTG
GCGTTTTCCATATATGGCTTATGAAAATGGTGGTGGTGCTTTCTTTATTCCTTATCTATTTGCCATGCTAACTGCTGGTA
TTCCATTTATGATAATGGAATTTGGTATGGGTCATAAATACAGAGGTTCTGCACCTCGTGCCTTTGCAAAATTAAATCAA
AAATATGAATGGCTTGGTTGGTTCCAAGTATTAATCGCAGCGGTAATTGCCGTTTATTACGTGGCCGTTATTGGTTGGGC
TATCTCTTACTTCAGTATGTCTTTTTCACAAAGTTGGGGACAAGACACGAATGCCTTTTTCTTTGGTGAGTACCTACAAC
TAGGTGATAACTCTCCAAGCAAACTAGGTAGCATTCAATGGCATATAGCAATTCCAATGGTGATTGCTTGGGCGATTACC
TTCGCCGCTATTTTTGGCGGTGTTAAGAGCGGTATTGAACGAGCAAGTAAAATCATGATGCCTTTACTCTTTATCATGGT
TATCGCACTTATTGGACGTATGGTCTTCTTACCGGGCGCATTAGATGGTCTTAACTATCTATTCCAACCTGATTTCAGCA
AAATAACCGACCCTAAAGTATGGTCAGCGGCTTATGGACAAATATTTTTCACATTAAGTGTTGGTTTTGCAATCATGTTA
GCTTATTCAAGTTACTTACCTGAGAAATCAGATATAAATAACAATGCTTTCATGACCGTATTGATCAACTGTGGTTTTTC
TATTATTGCTGGTATCTTAATCTTCTCTATCTTAGGCAATATGGCCCAAGAACAAGGGAAACCATTAACAGAAGTTGTTA
GTGCTGGTGTGGGTCTTGCCTTTGTAACTATCCCTGCTGCCATTAACTTATTGCCTGCTCCTTATATTTTAGGTCCTCTG
TTTTTCCTTGCTCTTGTTGTTGCAGGACTAAGCTCTCATATTTCTATTATTGAGGCCGTGACTTCTGCCTTTATTGATAA
GTTAAACTGGTCACGTAAAAAAGCAGCGTCTGTTGTTTGTGGTACAGGTTTAGTTGTGTCAATGGCCTTTGCAACCAATG
GCGGTCTGTTATTACTTGACCTAGTCGATTACTTTATTAATAACATAGCTCTACTTGCAAGTTGCTTACTTGAACTCATT
ATTATGGGGTGGTTAGTTAAACTTACTGATATTCGTAAGCATGTAAATGCAATATCTGAATTTACAATAGGTAAATGGTT
TGAAATCTGCCTCCGCTTTATTAGCCCGGCATTCTTAATCGTTATCCTTGGAACTAATATTGTAAATACGATTACAGATG
GTTACGGTGGTTATGCACAATCAGATCTACTGATCCTTGGTTGGGGTCTTATCGCTGCAATGTTAGTTGTTGGGATTGTT
ATTAATAAAACAAGTAAGGAAGCTTAA

Upstream 100 bases:

>100_bases
GCTAATCCATCTAGTTTGAGCAAATTTATTTCAAATTTAATAGAGAATGATACTAAACAAGCTTCAATTCTCAGGGAAAA
GTTTTTTAAAGGAGTGTTTT

Downstream 100 bases:

>100_bases
TATGACAACTGGTGCAATTATTATGATGGTTATTGGTTTAGGAATTACTTGGGGTGGCGCTGCCATCTGTATTCGTAAAG
CGATGAAAAGTGAATAACCT

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFGMGHKYRGSAPRAFAKLNQ
KYEWLGWFQVLIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAFFFGEYLQLGDNSPSKLGSIQWHIAIPMVIAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDINNNAFMTVLINCGFSIIAGILIFSILGNMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPAPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRKKAASVVCGTGLVVSMAFATNGGLLLLDLVDYFINNIALLASCLLELI
IMGWLVKLTDIRKHVNAISEFTIGKWFEICLRFISPAFLIVILGTNIVNTITDGYGGYAQSDLLILGWGLIAAMLVVGIV
INKTSKEA

Sequences:

>Translated_488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFGMGHKYRGSAPRAFAKLNQ
KYEWLGWFQVLIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAFFFGEYLQLGDNSPSKLGSIQWHIAIPMVIAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDINNNAFMTVLINCGFSIIAGILIFSILGNMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPAPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRKKAASVVCGTGLVVSMAFATNGGLLLLDLVDYFINNIALLASCLLELI
IMGWLVKLTDIRKHVNAISEFTIGKWFEICLRFISPAFLIVILGTNIVNTITDGYGGYAQSDLLILGWGLIAAMLVVGIV
INKTSKEA
>Mature_488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFGMGHKYRGSAPRAFAKLNQ
KYEWLGWFQVLIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAFFFGEYLQLGDNSPSKLGSIQWHIAIPMVIAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDINNNAFMTVLINCGFSIIAGILIFSILGNMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPAPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRKKAASVVCGTGLVVSMAFATNGGLLLLDLVDYFINNIALLASCLLELI
IMGWLVKLTDIRKHVNAISEFTIGKWFEICLRFISPAFLIVILGTNIVNTITDGYGGYAQSDLLILGWGLIAAMLVVGIV
INKTSKEA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=475, Percent_Identity=30.1052631578947, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI4507043, Length=480, Percent_Identity=30.2083333333333, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI289191351, Length=520, Percent_Identity=29.6153846153846, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI4557046, Length=520, Percent_Identity=29.6153846153846, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI289191377, Length=520, Percent_Identity=29.6153846153846, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI7657587, Length=443, Percent_Identity=30.4740406320542, Blast_Score=225, Evalue=6e-59,
Organism=Homo sapiens, GI4507041, Length=507, Percent_Identity=28.9940828402367, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI171184408, Length=445, Percent_Identity=31.4606741573034, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI171184406, Length=445, Percent_Identity=31.4606741573034, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI171184404, Length=445, Percent_Identity=31.4606741573034, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI188528618, Length=466, Percent_Identity=29.3991416309013, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI134304856, Length=529, Percent_Identity=28.9224952741021, Blast_Score=215, Evalue=9e-56,
Organism=Homo sapiens, GI197276623, Length=523, Percent_Identity=28.2982791586998, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI54607094, Length=523, Percent_Identity=28.2982791586998, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI5032097, Length=494, Percent_Identity=28.7449392712551, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI218563756, Length=494, Percent_Identity=28.5425101214575, Blast_Score=196, Evalue=3e-50,
Organism=Homo sapiens, GI67782317, Length=509, Percent_Identity=28.0943025540275, Blast_Score=192, Evalue=8e-49,
Organism=Homo sapiens, GI67782313, Length=509, Percent_Identity=28.0943025540275, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI6005715, Length=540, Percent_Identity=28.1481481481481, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI67782315, Length=509, Percent_Identity=28.0943025540275, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI92859670, Length=542, Percent_Identity=28.4132841328413, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI51468073, Length=521, Percent_Identity=23.9923224568138, Blast_Score=175, Evalue=8e-44,
Organism=Homo sapiens, GI194018524, Length=524, Percent_Identity=26.7175572519084, Blast_Score=166, Evalue=6e-41,
Organism=Homo sapiens, GI58219014, Length=314, Percent_Identity=30.2547770700637, Blast_Score=166, Evalue=6e-41,
Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=30.4918032786885, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI289191353, Length=438, Percent_Identity=27.1689497716895, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI11181770, Length=540, Percent_Identity=23.5185185185185, Blast_Score=153, Evalue=5e-37,
Organism=Homo sapiens, GI300360519, Length=305, Percent_Identity=28.8524590163934, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI218563758, Length=316, Percent_Identity=29.4303797468354, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI12408638, Length=540, Percent_Identity=21.6666666666667, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI21361693, Length=219, Percent_Identity=29.6803652968037, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI226437581, Length=254, Percent_Identity=26.7716535433071, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI197276625, Length=117, Percent_Identity=35.8974358974359, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI55749589, Length=544, Percent_Identity=21.3235294117647, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17555248, Length=509, Percent_Identity=28.4872298624754, Blast_Score=231, Evalue=5e-61,
Organism=Caenorhabditis elegans, GI133952791, Length=511, Percent_Identity=28.7671232876712, Blast_Score=215, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI71995588, Length=492, Percent_Identity=28.8617886178862, Blast_Score=209, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI17554804, Length=458, Percent_Identity=28.82096069869, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI25146584, Length=488, Percent_Identity=27.4590163934426, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17569475, Length=541, Percent_Identity=25.3234750462107, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17535731, Length=524, Percent_Identity=25.763358778626, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI71998244, Length=411, Percent_Identity=29.1970802919708, Blast_Score=154, Evalue=9e-38,
Organism=Caenorhabditis elegans, GI115534083, Length=506, Percent_Identity=22.1343873517787, Blast_Score=137, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI212642127, Length=326, Percent_Identity=26.3803680981595, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17542050, Length=131, Percent_Identity=37.4045801526718, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17542048, Length=427, Percent_Identity=23.1850117096019, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550877, Length=515, Percent_Identity=28.5436893203883, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI281363702, Length=469, Percent_Identity=30.2771855010661, Blast_Score=220, Evalue=2e-57,
Organism=Drosophila melanogaster, GI24582567, Length=506, Percent_Identity=30.8300395256917, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI19921936, Length=512, Percent_Identity=28.90625, Blast_Score=218, Evalue=8e-57,
Organism=Drosophila melanogaster, GI24639514, Length=501, Percent_Identity=27.3453093812375, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI221329674, Length=500, Percent_Identity=27.4, Blast_Score=214, Evalue=9e-56,
Organism=Drosophila melanogaster, GI281365034, Length=485, Percent_Identity=30.5154639175258, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24654186, Length=511, Percent_Identity=28.3757338551859, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI45551088, Length=481, Percent_Identity=28.8981288981289, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI24652942, Length=481, Percent_Identity=28.8981288981289, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI24762620, Length=477, Percent_Identity=29.769392033543, Blast_Score=209, Evalue=5e-54,
Organism=Drosophila melanogaster, GI24661428, Length=493, Percent_Identity=29.4117647058824, Blast_Score=208, Evalue=6e-54,
Organism=Drosophila melanogaster, GI24639516, Length=521, Percent_Identity=26.295585412668, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI19921352, Length=491, Percent_Identity=29.7352342158859, Blast_Score=205, Evalue=5e-53,
Organism=Drosophila melanogaster, GI24584353, Length=491, Percent_Identity=29.7352342158859, Blast_Score=205, Evalue=5e-53,
Organism=Drosophila melanogaster, GI45551183, Length=428, Percent_Identity=30.3738317757009, Blast_Score=204, Evalue=8e-53,
Organism=Drosophila melanogaster, GI17136952, Length=504, Percent_Identity=26.984126984127, Blast_Score=201, Evalue=7e-52,
Organism=Drosophila melanogaster, GI281364394, Length=504, Percent_Identity=26.984126984127, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI28574704, Length=504, Percent_Identity=26.984126984127, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI17136950, Length=504, Percent_Identity=26.984126984127, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI28574702, Length=504, Percent_Identity=26.984126984127, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI281364136, Length=527, Percent_Identity=29.7912713472486, Blast_Score=196, Evalue=3e-50,
Organism=Drosophila melanogaster, GI24639853, Length=525, Percent_Identity=25.3333333333333, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI281363700, Length=330, Percent_Identity=32.7272727272727, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24655079, Length=519, Percent_Identity=26.2042389210019, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24582569, Length=468, Percent_Identity=29.0598290598291, Blast_Score=169, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 53126; Mature: 53126

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCC
>Mature Secondary Structure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HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]