Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695689

Identifier: 209695689

GI number: 209695689

Start: 2423227

End: 2423868

Strand: Reverse

Name: 209695689

Synonym: VSAL_I2253

Alternate gene names: NA

Gene position: 2423868-2423227 (Counterclockwise)

Preceding gene: 209695690

Following gene: 209695671

Centisome position: 72.89

GC content: 36.76

Gene sequence:

>642_bases
ATGACGATACTTTATTCATTTCGACGCTGTCCTTATGCAATGCGCGCTCGATTAAGTCTTTTACTCTCTCATCGTACCGT
GATGCTACGGGAGATAGAATTAAAGCATAAACCAGAAGCCCTACTTATAGCATCCTCTAAGGGAACGGTGCCTGTTTTAG
TTAAAGATAATGGCTGTGTTATAGATGAGAGTTTGGACATTATGAAGTGGGCTTTAATCGACTCAGATCTTCTTATTAAT
GCCACAGAAGAGATGCATCTTTTAATTCAAGAAAATGATCATGAATTCAAAGGATGGCTAGATAAATATAAATACTCAGA
TCGCTACCCTGAACATTCCGAAGCCTATTATCGCGAACAAGGAGAGATATTCTTGGAAAAGATAGAGAGTCGATTATCAA
AATCAACAATGCTTTTTAATGAACAATACAGCTTTGCAGATATTGCCATTTTACCCTTTATCAGACAATTTGCTTTTGTG
GATATTCAATGGTTCAAACAAAGTAACTATACTCTTACTCGACAATGGCTTGATCACTTTATAGAGTCACACTTATTCCT
TTCCATTATGACAAAATACCCGACTTGGTTAGACTCACAACATGAAGTCAGTTTCCCTCAAAATAAAGACCGTACTCTTT
AG

Upstream 100 bases:

>100_bases
TCGTAAAGCGATGAAAAGTGAATAACCTCAGCCCTAAACAATAGTAATATAAAGCAGATCTTCGGATCTGCTTTTTTTAT
TTCTCCTAAGGTGTAAATTA

Downstream 100 bases:

>100_bases
ACTGGCAATAAAAAAGGAGACTCGAAAGTCTCCTTTTTTTCATTCATAAAATCAGGAATTAGTTATGGCTAATCCATTCA
TTCATGTCTGTTTTCAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Glutathione S-Transferase; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase N Terminus; Glutathione S-Transferase N-Terminal Domain; Glutaredoxin; Glutathione-S-Transferase Domain-Containing Protein; Rhodanese Domain Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase Family Protein; Glutathione S-Transferase C-Terminal-Like Domain; Glutathione S-Transferase Domain; Glutathione-S-Transferase Domain Protein; Glutathione S-Transferase Omega Class; Rhodanese Domain-Containing Protein; Glutathione S-Transferase N-Terminal Domain Protein; Stringent Starvation Protein A; Glutathione S-Transferase N Terminal Domain Protein; GSH-Dependent Dehydroascorbate Reductase; Glutathione S-Transferase C-Terminal Domain Protein

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTILYSFRRCPYAMRARLSLLLSHRTVMLREIELKHKPEALLIASSKGTVPVLVKDNGCVIDESLDIMKWALIDSDLLIN
ATEEMHLLIQENDHEFKGWLDKYKYSDRYPEHSEAYYREQGEIFLEKIESRLSKSTMLFNEQYSFADIAILPFIRQFAFV
DIQWFKQSNYTLTRQWLDHFIESHLFLSIMTKYPTWLDSQHEVSFPQNKDRTL

Sequences:

>Translated_213_residues
MTILYSFRRCPYAMRARLSLLLSHRTVMLREIELKHKPEALLIASSKGTVPVLVKDNGCVIDESLDIMKWALIDSDLLIN
ATEEMHLLIQENDHEFKGWLDKYKYSDRYPEHSEAYYREQGEIFLEKIESRLSKSTMLFNEQYSFADIAILPFIRQFAFV
DIQWFKQSNYTLTRQWLDHFIESHLFLSIMTKYPTWLDSQHEVSFPQNKDRTL
>Mature_212_residues
TILYSFRRCPYAMRARLSLLLSHRTVMLREIELKHKPEALLIASSKGTVPVLVKDNGCVIDESLDIMKWALIDSDLLINA
TEEMHLLIQENDHEFKGWLDKYKYSDRYPEHSEAYYREQGEIFLEKIESRLSKSTMLFNEQYSFADIAILPFIRQFAFVD
IQWFKQSNYTLTRQWLDHFIESHLFLSIMTKYPTWLDSQHEVSFPQNKDRTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25395; Mature: 25264

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILYSFRRCPYAMRARLSLLLSHRTVMLREIELKHKPEALLIASSKGTVPVLVKDNGCV
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCEE
IDESLDIMKWALIDSDLLINATEEMHLLIQENDHEFKGWLDKYKYSDRYPEHSEAYYREQ
EECCHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
GEIFLEKIESRLSKSTMLFNEQYSFADIAILPFIRQFAFVDIQWFKQSNYTLTRQWLDHF
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHHH
IESHLFLSIMTKYPTWLDSQHEVSFPQNKDRTL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TILYSFRRCPYAMRARLSLLLSHRTVMLREIELKHKPEALLIASSKGTVPVLVKDNGCV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCEE
IDESLDIMKWALIDSDLLINATEEMHLLIQENDHEFKGWLDKYKYSDRYPEHSEAYYREQ
EECCHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
GEIFLEKIESRLSKSTMLFNEQYSFADIAILPFIRQFAFVDIQWFKQSNYTLTRQWLDHF
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHHH
IESHLFLSIMTKYPTWLDSQHEVSFPQNKDRTL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA