Click here to switch to the map view.

The map label for this gene is yciM [H]

Identifier: 209695660

GI number: 209695660

Start: 2389891

End: 2391060

Strand: Direct

Name: yciM [H]

Synonym: VSAL_I2224

Alternate gene names: 209695660

Gene position: 2389891-2391060 (Clockwise)

Preceding gene: 209695659

Following gene: 209695661

Centisome position: 71.87

GC content: 38.29

Gene sequence:

>1170_bases
ATGTTAGAGCTGCTATTCCTACTATTACCTATTGCTGCCGGCTATGGTTGGTATATGGGTAATCGGAATGCTGGACAACA
ACGTCAAAGAGAAACGAATCACCTGTCTCGTCAATACGTGACGGGTTTGAATTTATTGTTGTCTGATCAATCAGATAAAG
CCGTCGATCACTTTATTGAATTACTTCAAGTTGACAGTGATACCATTGATACCCATCTTGCTCTAGGCAATCTTTTTAGA
AGCAAAGGTGAGGTTGATCGCGCTATTAAAATCCACCAAAATCTCATCGCTCGTCCTAATCTTACTCTTGAACAACGAAA
TATTGCTCTCCAACAATTAGCCAAAGATTATATGGTTGCAGGTATTCTTGATCGTGCTGAAAAAATATTTGAGCAATTGG
TCGACGAACCAGAGCATAAAGAAGCCGCATTATTGCAACTTGTATCTATCCATCAGCAAACCCGTGAATGGGAACAAGCC
ATTAAATTTGCAAATAGTTTGGTTAGGATGGGAAAGAAAAAAATCAAGCCAGACATTGCCCATTATTATTGTGAATTAGC
AACATTAGACTTAGCTGAAGAGAATATTAATGCAGCGAAGCAACATTTAAAGAAAGCACTGTCGACGGATAATTTATGCG
TTAGAGCATCAATAATGATGGCTAAGCTTTTAATGAAAGAAAACAATCATAAAGCTGCCGTTAGCCAATTAGAATCAGTA
TTAGATCAAGATATTGATTTTGTCAGTGAGGCATTACCTTTACTTGCTGAATGTTATGAAACGTTAGATAGAGAAGGTGT
ATTACTGCACTTCTTAAAAGAGGCTATTTCGAAAGGTTCAGGCGCAAGTGCTGAATTAATGTTGTCGAATCTGATTGCAA
AGCATGAAGGTACCGCTGTAGCTCAAGGCTACATGACGAAACAGTTATTAAAAAACCCAACAATGAAAGGCTTTTATCGT
TTAATGGGCTATCACGTAGATGAAGCTGAAAACGGTCGAGCAAAAGCGAGCTTATCAAGCTTGCAAAACCTAGTTGGTGA
ACAATTAAAAATGAAGCCAAATTATCGATGCAGTAAATGTGGATTTTCTGCACATCGTTTATTTTGGCAATGTCCTTCCT
GTAAAGGGTGGGGGGTTATTAAGCCAATTAGAGGCTTAGACGGTGAATAA

Upstream 100 bases:

>100_bases
AAGGCAAGCGTTACTCAACGCCGATTACGTAAACGTCTCGAAAAACAAAACGCAGAATTGAATAAGCTGCGTCTTGAGTC
AACAAAAGGATAGTTACTGA

Downstream 100 bases:

>100_bases
TTAAGAGGCGCATGAGTGCCTCTTTTTTTGAATAAAATAAAAATAAGGATAGAAAATGAAAGACCAAAAGGTAATTGTGG
CATTGGATTATGACCGTCAA

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPIAAGYGWYMGNRNAGQQRQRETNHLSRQYVTGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
SKGEVDRAIKIHQNLIARPNLTLEQRNIALQQLAKDYMVAGILDRAEKIFEQLVDEPEHKEAALLQLVSIHQQTREWEQA
IKFANSLVRMGKKKIKPDIAHYYCELATLDLAEENINAAKQHLKKALSTDNLCVRASIMMAKLLMKENNHKAAVSQLESV
LDQDIDFVSEALPLLAECYETLDREGVLLHFLKEAISKGSGASAELMLSNLIAKHEGTAVAQGYMTKQLLKNPTMKGFYR
LMGYHVDEAENGRAKASLSSLQNLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE

Sequences:

>Translated_389_residues
MLELLFLLLPIAAGYGWYMGNRNAGQQRQRETNHLSRQYVTGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
SKGEVDRAIKIHQNLIARPNLTLEQRNIALQQLAKDYMVAGILDRAEKIFEQLVDEPEHKEAALLQLVSIHQQTREWEQA
IKFANSLVRMGKKKIKPDIAHYYCELATLDLAEENINAAKQHLKKALSTDNLCVRASIMMAKLLMKENNHKAAVSQLESV
LDQDIDFVSEALPLLAECYETLDREGVLLHFLKEAISKGSGASAELMLSNLIAKHEGTAVAQGYMTKQLLKNPTMKGFYR
LMGYHVDEAENGRAKASLSSLQNLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE
>Mature_389_residues
MLELLFLLLPIAAGYGWYMGNRNAGQQRQRETNHLSRQYVTGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
SKGEVDRAIKIHQNLIARPNLTLEQRNIALQQLAKDYMVAGILDRAEKIFEQLVDEPEHKEAALLQLVSIHQQTREWEQA
IKFANSLVRMGKKKIKPDIAHYYCELATLDLAEENINAAKQHLKKALSTDNLCVRASIMMAKLLMKENNHKAAVSQLESV
LDQDIDFVSEALPLLAECYETLDREGVLLHFLKEAISKGSGASAELMLSNLIAKHEGTAVAQGYMTKQLLKNPTMKGFYR
LMGYHVDEAENGRAKASLSSLQNLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=51.1873350923483, Blast_Score=427, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43785; Mature: 43785

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPIAAGYGWYMGNRNAGQQRQRETNHLSRQYVTGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDSDTIDTHLALGNLFRSKGEVDRAIKIHQNLIARPNLTLEQRNIALQQLAKDYMVA
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GILDRAEKIFEQLVDEPEHKEAALLQLVSIHQQTREWEQAIKFANSLVRMGKKKIKPDIA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HYYCELATLDLAEENINAAKQHLKKALSTDNLCVRASIMMAKLLMKENNHKAAVSQLESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDQDIDFVSEALPLLAECYETLDREGVLLHFLKEAISKGSGASAELMLSNLIAKHEGTAV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
AQGYMTKQLLKNPTMKGFYRLMGYHVDEAENGRAKASLSSLQNLVGEQLKMKPNYRCSKC
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
GFSAHRLFWQCPSCKGWGVIKPIRGLDGE
CCHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPIAAGYGWYMGNRNAGQQRQRETNHLSRQYVTGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDSDTIDTHLALGNLFRSKGEVDRAIKIHQNLIARPNLTLEQRNIALQQLAKDYMVA
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GILDRAEKIFEQLVDEPEHKEAALLQLVSIHQQTREWEQAIKFANSLVRMGKKKIKPDIA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HYYCELATLDLAEENINAAKQHLKKALSTDNLCVRASIMMAKLLMKENNHKAAVSQLESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDQDIDFVSEALPLLAECYETLDREGVLLHFLKEAISKGSGASAELMLSNLIAKHEGTAV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
AQGYMTKQLLKNPTMKGFYRLMGYHVDEAENGRAKASLSSLQNLVGEQLKMKPNYRCSKC
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
GFSAHRLFWQCPSCKGWGVIKPIRGLDGE
CCHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]