| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is icd [H]
Identifier: 209695642
GI number: 209695642
Start: 2369130
End: 2371358
Strand: Direct
Name: icd [H]
Synonym: VSAL_I2205
Alternate gene names: 209695642
Gene position: 2369130-2371358 (Clockwise)
Preceding gene: 209695640
Following gene: 209695647
Centisome position: 71.25
GC content: 42.62
Gene sequence:
>2229_bases ATGACAACGCAAAAATCTAAGATTATCTATACCATCACTGATGAAGCGCCAGCATTGGCGACGCATTCACTTCTTCCAAT TATTCAAGCATTTGCAGCATCATCTAACGTTGATGTTGATACTCGCGACATCTCACTTGCGGGTCGTGTCATTGCAAATT TTTCTGAATACCTAACAGAAGACCAACGTATTAGTGATGCATTGGTAGAGCTTGGCGAACTCGCTAAAACGCCTGAAGCA AACATCATTAAACTTCCGAACATCAGTGCGTCGATTCCTCAACTTCATGCGGTAATTAAAGAGCTTCAAGCGAAAGGCTA TGCTCTGCCTAATTACCCTGAAGAAGCAAAAACGGACGAAGAAAAAACCGTTAAAGCGGTTTACGATAAAATTAAAGGCT CAGCAGTTAACCCTGTCCTTCGTGAAGGTAACTCTGATCGTCGTGCACCGGGTGCGGTTAAGCAATACGCGCGTAATAAC CCACACTCAATGGGTGCGTGGGCGAAGGATTCAAAATCACATGTTGCAAGCATGAGTGAAGGTGACTTCTACGCAAGCGA AAAATCAGTGACGATTGACGGTGCAACAAACGTTAATATTGAATTTGTTGCTGATAATGGCGATGTAACAGTACTGAAAG AAGGACTGGCACTGAAAGACAAAGAAATCATTGATGGTTCTTGTCTAAGCAAAAAAGCATTGGTTGAATTCTTCGAAGCT GAAATTAAAAAAGCCAAAGAAGAAGATGTTCTGCTTTCACTGCATATGAAAGCGACGATGATGAAAGTCTCTGATCCAGT TATTTTTGGTCACGCGGTTAAAGTATTCTATAAAGAAGTCTTTGATAAATACGCGACGACATTTGCAAAACTTGGTGTTG ATGCAAATAATGGTGTTGGTGATGTTTATACTAAAATAGTATCGCTTCCTGATGCTGAAAAAGCCGCGATTGAAGCGGAT TTAGCGGCGGTTTATGAATACCAACCAGAGCTTGCAATGGTTGATTCAGATCGTGGTATCACGAATCTTCATGTACCAAG TGATGTAATCATTGATGCTTCTATGCCTGCTGCATTACGTACTTCTGGTCGTATGTGGGGACCAGATGGTCAACTAAAAG ATACGAAAGCAATGATCCCAGATCGTTGTTATGCCGGTGTGTACCAATCGGTTATTGAATTCTGTAAAGTAAATGGCGCG TTTGATCCAACAACGATGGGCTCTGTGCCAAACGTAGGATTAATGGCTCAAAAAGCAGAGGAATATGGCTCTCATGATAA GACCTTCATTCTTCCTGCTGCGGGTACCGTTCGAGTGGTTGATGCGACAGGCACCGCACTGATTGAACATTCCGTTGGTG AAGGCGATATTTGGCGTATGTGTCAGGCAAAAGACGCTCCGATCCAAGATTGGGTTAAATTAGCGGTAAACCGTGCTCGT GCAACAGGAACTCCGGCTATTTTCTGGCTTGATACTAATCGCCAACATGATGCTGAACTGATTAAGAAAGTAAATACTTA CCTTGCCGATCATGATACATCAGGTCTTGATATTCAAATTTTGTCTCCAGTTGCGGCGACTGAATTTACGCTAGCGCGTA TTATTAAAGGCGAAGATACGATCTCGGTAACGGGTAATGTATTACGTGATTATCTAACGGATTTATTCCCTATTCTAGAG CTAGGTACATCAGCGAAAATGCTGTCTATTGTTCCTCTTATGAATGGTGGTGGTCTGTTTGAAACGGGGGCGGGTGGTTC TGCACCAAAACATGTTCAACAATTCGAAAAAGAAAACCATTTACGTTGGGATTCTTTAGGTGAATTCTTAGCATTAGCAG CGTCGTTTGAACACTTAAGTGTGACGACTGGCAATGCAAAAGCACAAATACTTGCTGATACACTTGATGCTGCAACGTCT AAATTCCTTGAAACGAATAAATCGCCATCACGTCGTGTCGGTGAGTTGGATAACCGTGGTAGCCATTTCTATCTAGCAAT GTATTGGGCTCAAGAACTTGCAGCGCAAACGGGTGATGCAGAACTTCAAGCCTATTTTGGTTCATTGGCTGAAACACTAA CGTCAAATGAAGCTAAAATAGTTGAAGAGTTAAATGCAGCGCAAGGTGTTGTTGGCAATGTTGGGGGGTACTTCCAACCG ATTGCTGAACTTGCTGCAAAAGAAATGCGTCCAAGTGCAACGTTGAATGCGGCATTAGCGACTTTATAG
Upstream 100 bases:
>100_bases TACGCGCGTGAAACAAAAGACTAATAAAAATAAAGTCGGTAAATTACAAAGCCTATTATACGTTTTGTTATTGGTTTTGT AGATTAAATAGGGAAATTAA
Downstream 100 bases:
>100_bases TTTGAATTATTTTTAAATTATAACGTGAATACGTATTAACTAAAAAAGCCTTGAGGTAGTTATATCTCAAGGCTTTTTGT TATCTATGTCGTGATGTTTT
Product: isocitrate dehydrogenase [NADP]
Products: NA
Alternate protein names: IDH-II; IDP-2; NADP+-specific ICDH 2; Oxalosuccinate decarboxylase 2 [H]
Number of amino acids: Translated: 742; Mature: 741
Protein sequence:
>742_residues MTTQKSKIIYTITDEAPALATHSLLPIIQAFAASSNVDVDTRDISLAGRVIANFSEYLTEDQRISDALVELGELAKTPEA NIIKLPNISASIPQLHAVIKELQAKGYALPNYPEEAKTDEEKTVKAVYDKIKGSAVNPVLREGNSDRRAPGAVKQYARNN PHSMGAWAKDSKSHVASMSEGDFYASEKSVTIDGATNVNIEFVADNGDVTVLKEGLALKDKEIIDGSCLSKKALVEFFEA EIKKAKEEDVLLSLHMKATMMKVSDPVIFGHAVKVFYKEVFDKYATTFAKLGVDANNGVGDVYTKIVSLPDAEKAAIEAD LAAVYEYQPELAMVDSDRGITNLHVPSDVIIDASMPAALRTSGRMWGPDGQLKDTKAMIPDRCYAGVYQSVIEFCKVNGA FDPTTMGSVPNVGLMAQKAEEYGSHDKTFILPAAGTVRVVDATGTALIEHSVGEGDIWRMCQAKDAPIQDWVKLAVNRAR ATGTPAIFWLDTNRQHDAELIKKVNTYLADHDTSGLDIQILSPVAATEFTLARIIKGEDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASFEHLSVTTGNAKAQILADTLDAATS KFLETNKSPSRRVGELDNRGSHFYLAMYWAQELAAQTGDAELQAYFGSLAETLTSNEAKIVEELNAAQGVVGNVGGYFQP IAELAAKEMRPSATLNAALATL
Sequences:
>Translated_742_residues MTTQKSKIIYTITDEAPALATHSLLPIIQAFAASSNVDVDTRDISLAGRVIANFSEYLTEDQRISDALVELGELAKTPEA NIIKLPNISASIPQLHAVIKELQAKGYALPNYPEEAKTDEEKTVKAVYDKIKGSAVNPVLREGNSDRRAPGAVKQYARNN PHSMGAWAKDSKSHVASMSEGDFYASEKSVTIDGATNVNIEFVADNGDVTVLKEGLALKDKEIIDGSCLSKKALVEFFEA EIKKAKEEDVLLSLHMKATMMKVSDPVIFGHAVKVFYKEVFDKYATTFAKLGVDANNGVGDVYTKIVSLPDAEKAAIEAD LAAVYEYQPELAMVDSDRGITNLHVPSDVIIDASMPAALRTSGRMWGPDGQLKDTKAMIPDRCYAGVYQSVIEFCKVNGA FDPTTMGSVPNVGLMAQKAEEYGSHDKTFILPAAGTVRVVDATGTALIEHSVGEGDIWRMCQAKDAPIQDWVKLAVNRAR ATGTPAIFWLDTNRQHDAELIKKVNTYLADHDTSGLDIQILSPVAATEFTLARIIKGEDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASFEHLSVTTGNAKAQILADTLDAATS KFLETNKSPSRRVGELDNRGSHFYLAMYWAQELAAQTGDAELQAYFGSLAETLTSNEAKIVEELNAAQGVVGNVGGYFQP IAELAAKEMRPSATLNAALATL >Mature_741_residues TTQKSKIIYTITDEAPALATHSLLPIIQAFAASSNVDVDTRDISLAGRVIANFSEYLTEDQRISDALVELGELAKTPEAN IIKLPNISASIPQLHAVIKELQAKGYALPNYPEEAKTDEEKTVKAVYDKIKGSAVNPVLREGNSDRRAPGAVKQYARNNP HSMGAWAKDSKSHVASMSEGDFYASEKSVTIDGATNVNIEFVADNGDVTVLKEGLALKDKEIIDGSCLSKKALVEFFEAE IKKAKEEDVLLSLHMKATMMKVSDPVIFGHAVKVFYKEVFDKYATTFAKLGVDANNGVGDVYTKIVSLPDAEKAAIEADL AAVYEYQPELAMVDSDRGITNLHVPSDVIIDASMPAALRTSGRMWGPDGQLKDTKAMIPDRCYAGVYQSVIEFCKVNGAF DPTTMGSVPNVGLMAQKAEEYGSHDKTFILPAAGTVRVVDATGTALIEHSVGEGDIWRMCQAKDAPIQDWVKLAVNRARA TGTPAIFWLDTNRQHDAELIKKVNTYLADHDTSGLDIQILSPVAATEFTLARIIKGEDTISVTGNVLRDYLTDLFPILEL GTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASFEHLSVTTGNAKAQILADTLDAATSK FLETNKSPSRRVGELDNRGSHFYLAMYWAQELAAQTGDAELQAYFGSLAETLTSNEAKIVEELNAAQGVVGNVGGYFQPI AELAAKEMRPSATLNAALATL
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80191; Mature: 80059
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQKSKIIYTITDEAPALATHSLLPIIQAFAASSNVDVDTRDISLAGRVIANFSEYLTE CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC DQRISDALVELGELAKTPEANIIKLPNISASIPQLHAVIKELQAKGYALPNYPEEAKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKTVKAVYDKIKGSAVNPVLREGNSDRRAPGAVKQYARNNPHSMGAWAKDSKSHVASMSE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC GDFYASEKSVTIDGATNVNIEFVADNGDVTVLKEGLALKDKEIIDGSCLSKKALVEFFEA CCEEECCCCEEECCCCCEEEEEEECCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHH EIKKAKEEDVLLSLHMKATMMKVSDPVIFGHAVKVFYKEVFDKYATTFAKLGVDANNGVG HHHHCCCCCEEEEEEHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYTKIVSLPDAEKAAIEADLAAVYEYQPELAMVDSDRGITNLHVPSDVIIDASMPAALR HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH TSGRMWGPDGQLKDTKAMIPDRCYAGVYQSVIEFCKVNGAFDPTTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFILPAAGTVRVVDATGTALIEHSVGEGDIWRMCQAKDAPIQDWVKLAVNRAR HHCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHC ATGTPAIFWLDTNRQHDAELIKKVNTYLADHDTSGLDIQILSPVAATEFTLARIIKGEDT CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENH EEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALAASFEHLSVTTGNAKAQILADTLDAATSKFLETNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC SHFYLAMYWAQELAAQTGDAELQAYFGSLAETLTSNEAKIVEELNAAQGVVGNVGGYFQP CEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHH IAELAAKEMRPSATLNAALATL HHHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure TTQKSKIIYTITDEAPALATHSLLPIIQAFAASSNVDVDTRDISLAGRVIANFSEYLTE CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC DQRISDALVELGELAKTPEANIIKLPNISASIPQLHAVIKELQAKGYALPNYPEEAKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKTVKAVYDKIKGSAVNPVLREGNSDRRAPGAVKQYARNNPHSMGAWAKDSKSHVASMSE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC GDFYASEKSVTIDGATNVNIEFVADNGDVTVLKEGLALKDKEIIDGSCLSKKALVEFFEA CCEEECCCCEEECCCCCEEEEEEECCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHH EIKKAKEEDVLLSLHMKATMMKVSDPVIFGHAVKVFYKEVFDKYATTFAKLGVDANNGVG HHHHCCCCCEEEEEEHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYTKIVSLPDAEKAAIEADLAAVYEYQPELAMVDSDRGITNLHVPSDVIIDASMPAALR HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH TSGRMWGPDGQLKDTKAMIPDRCYAGVYQSVIEFCKVNGAFDPTTMGSVPNVGLMAQKAE CCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFILPAAGTVRVVDATGTALIEHSVGEGDIWRMCQAKDAPIQDWVKLAVNRAR HHCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHC ATGTPAIFWLDTNRQHDAELIKKVNTYLADHDTSGLDIQILSPVAATEFTLARIIKGEDT CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENH EEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALAASFEHLSVTTGNAKAQILADTLDAATSKFLETNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC SHFYLAMYWAQELAAQTGDAELQAYFGSLAETLTSNEAKIVEELNAAQGVVGNVGGYFQP CEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHH IAELAAKEMRPSATLNAALATL HHHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226630; 1295895 [H]