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The map label for this gene is ycgB [H]

Identifier: 209695643

GI number: 209695643

Start: 2371466

End: 2372983

Strand: Reverse

Name: ycgB [H]

Synonym: VSAL_I2206

Alternate gene names: 209695643

Gene position: 2372983-2371466 (Counterclockwise)

Preceding gene: 209695644

Following gene: 209695641

Centisome position: 71.36

GC content: 37.22

Gene sequence:

>1518_bases
ATGAATAAAAAAAGTAGGTTACCTGATGGGCCAGATTGGACCTTTCAAACCTTAGAACAATACCATGTTGAAATTAAGCG
CGTTGCGGAGTATTACCGTTTAGATACCTACCCTAACCAAATTGAGATCATCACCGCTGAACAAATGATGGATGCGTATT
CTAGTGTTGGGATGCCCATTAATTACCATCATTGGTCATTTGGAAAAAAATTCATTCAAACCGAACAGAATTATAAGCAT
GGCCAAATGGGCTTAGCTTATGAAATTGTCATCAACTCCTCCCCTTGCATCTCTTATCTTATGGAAGAAAATACCATTAC
GATGCAAGCATTAGTGATGGCACATGCTTGTTATGGGCATAACTCTTTCTTTAAAGGGAATTATTTATTTCAAACATGGA
CTGATGCGAGCTCAATAGTCGATTATCTACTTTTCGCTCAGCAATACATTACTCAGTGTGAAGAAAAGCATGGCGTTGAT
GAGGTAGAGGCCATTCTAGATTCTTGTCACGCACTCATGAACTATGGCGTAGATAGATACAAACGCCCTGAAAAAATATC
CATTGCAGAAGAAAAAATTCGTCAAGAAGACAGAGAGGCTTACCTTCAGTCACAAGTAAATGACCTATGGCGAACCGTTC
CAAAAACCAAGCAAGAAAACAACGAAGAAAAAGAAAGATTCCCCTCTGAGCCACAAGAAAATATTCTGTATTTTATTGAA
AAACACGCACCATTATTAGAATCGTGGCAACGGGAATTGGTCAGGATTATTCGTAAGATAAGTCAATATTTTTATCCACA
AAAACAAACACAGGTAATGAATGAAGGATGGGCAACATTTTGGCATTACACTATTTTAAATCATCTTTACGATGAAGACT
TAGTGTCCGATAAATTCATTTTAGAATTTTTACATAGCCATACCAATGTAGTGGCGCAACCAAGCTATAACAGCCCTTAT
TATAGTGGGATTAACCCTTATGCATTAGGGTTTGCTATGTTTCAAGATATTCGCCGTATCTGTGAAGAGCCCACAGATGA
AGATAGGGAATGGTTCCCAGATTTAGCAGGAAGTGATTGGTTAGACGCCGTTCATTTTGCGATGCATAACTTCAAAGATG
AAAGTTTCATAAGCCAGTATTTATCACCTAAATTAATACGTGAATTTAAATTATTTGCCATATTAGACGATGATAAAAGT
AAACACATTGAGATTAGTGCTATTCATGACGATGTCGGTTATCGAGAGATTCGAGAAAAGTTAGCTGCTCAATACAATTT
GAGTAATTTAGAACCGAATATTCAAGTATGGAATGTGGATGTAAGAGGTGACCGTTCATTAATATTAAGGCACGTCCCAC
ACAATCGAATTCCTTTAGATAAAGGCCACCAAGAAGTAATGAAGCACTTGCATCGTTTGTGGGGGTTTGATGTGATATTA
GAAGAGGTTATTTCATTTAACCGGGCAGAAATCATTTCATCTTGTCCAAAGCGTAATTATTACAATACCACGATTTAA

Upstream 100 bases:

>100_bases
GGTGCAATAACTTTGCGATGAAAAATATCAAAACCGTTGATGATATTTACCCTATTTTTAGAGAATTATTCCACAAACAA
TTGGCTTAGGAGGAAATACT

Downstream 100 bases:

>100_bases
TCACTTAAAAACATCACGACATAGATAACAAAAAGCCTTGAGATATAACTACCTCAAGGCTTTTTTAGTTAATACGTATT
CACGTTATAATTTAAAAATA

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MNKKSRLPDGPDWTFQTLEQYHVEIKRVAEYYRLDTYPNQIEIITAEQMMDAYSSVGMPINYHHWSFGKKFIQTEQNYKH
GQMGLAYEIVINSSPCISYLMEENTITMQALVMAHACYGHNSFFKGNYLFQTWTDASSIVDYLLFAQQYITQCEEKHGVD
EVEAILDSCHALMNYGVDRYKRPEKISIAEEKIRQEDREAYLQSQVNDLWRTVPKTKQENNEEKERFPSEPQENILYFIE
KHAPLLESWQRELVRIIRKISQYFYPQKQTQVMNEGWATFWHYTILNHLYDEDLVSDKFILEFLHSHTNVVAQPSYNSPY
YSGINPYALGFAMFQDIRRICEEPTDEDREWFPDLAGSDWLDAVHFAMHNFKDESFISQYLSPKLIREFKLFAILDDDKS
KHIEISAIHDDVGYREIREKLAAQYNLSNLEPNIQVWNVDVRGDRSLILRHVPHNRIPLDKGHQEVMKHLHRLWGFDVIL
EEVISFNRAEIISSCPKRNYYNTTI

Sequences:

>Translated_505_residues
MNKKSRLPDGPDWTFQTLEQYHVEIKRVAEYYRLDTYPNQIEIITAEQMMDAYSSVGMPINYHHWSFGKKFIQTEQNYKH
GQMGLAYEIVINSSPCISYLMEENTITMQALVMAHACYGHNSFFKGNYLFQTWTDASSIVDYLLFAQQYITQCEEKHGVD
EVEAILDSCHALMNYGVDRYKRPEKISIAEEKIRQEDREAYLQSQVNDLWRTVPKTKQENNEEKERFPSEPQENILYFIE
KHAPLLESWQRELVRIIRKISQYFYPQKQTQVMNEGWATFWHYTILNHLYDEDLVSDKFILEFLHSHTNVVAQPSYNSPY
YSGINPYALGFAMFQDIRRICEEPTDEDREWFPDLAGSDWLDAVHFAMHNFKDESFISQYLSPKLIREFKLFAILDDDKS
KHIEISAIHDDVGYREIREKLAAQYNLSNLEPNIQVWNVDVRGDRSLILRHVPHNRIPLDKGHQEVMKHLHRLWGFDVIL
EEVISFNRAEIISSCPKRNYYNTTI
>Mature_505_residues
MNKKSRLPDGPDWTFQTLEQYHVEIKRVAEYYRLDTYPNQIEIITAEQMMDAYSSVGMPINYHHWSFGKKFIQTEQNYKH
GQMGLAYEIVINSSPCISYLMEENTITMQALVMAHACYGHNSFFKGNYLFQTWTDASSIVDYLLFAQQYITQCEEKHGVD
EVEAILDSCHALMNYGVDRYKRPEKISIAEEKIRQEDREAYLQSQVNDLWRTVPKTKQENNEEKERFPSEPQENILYFIE
KHAPLLESWQRELVRIIRKISQYFYPQKQTQVMNEGWATFWHYTILNHLYDEDLVSDKFILEFLHSHTNVVAQPSYNSPY
YSGINPYALGFAMFQDIRRICEEPTDEDREWFPDLAGSDWLDAVHFAMHNFKDESFISQYLSPKLIREFKLFAILDDDKS
KHIEISAIHDDVGYREIREKLAAQYNLSNLEPNIQVWNVDVRGDRSLILRHVPHNRIPLDKGHQEVMKHLHRLWGFDVIL
EEVISFNRAEIISSCPKRNYYNTTI

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=500, Percent_Identity=74.8, Blast_Score=821, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 59839; Mature: 59839

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKSRLPDGPDWTFQTLEQYHVEIKRVAEYYRLDTYPNQIEIITAEQMMDAYSSVGMPI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCC
NYHHWSFGKKFIQTEQNYKHGQMGLAYEIVINSSPCISYLMEENTITMQALVMAHACYGH
CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCC
NSFFKGNYLFQTWTDASSIVDYLLFAQQYITQCEEKHGVDEVEAILDSCHALMNYGVDRY
CCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
KRPEKISIAEEKIRQEDREAYLQSQVNDLWRTVPKTKQENNEEKERFPSEPQENILYFIE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCHHHHHHHHH
KHAPLLESWQRELVRIIRKISQYFYPQKQTQVMNEGWATFWHYTILNHLYDEDLVSDKFI
HCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEFLHSHTNVVAQPSYNSPYYSGINPYALGFAMFQDIRRICEEPTDEDREWFPDLAGSDW
HHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHH
LDAVHFAMHNFKDESFISQYLSPKLIREFKLFAILDDDKSKHIEISAIHDDVGYREIREK
HHHHHHHHHCCCCHHHHHHHHCHHHHHHHHEEEEEECCCCCEEEEEEECCCCCHHHHHHH
LAAQYNLSNLEPNIQVWNVDVRGDRSLILRHVPHNRIPLDKGHQEVMKHLHRLWGFDVIL
HHHHHCCCCCCCCCEEEEEEECCCHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EEVISFNRAEIISSCPKRNYYNTTI
HHHHCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNKKSRLPDGPDWTFQTLEQYHVEIKRVAEYYRLDTYPNQIEIITAEQMMDAYSSVGMPI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCC
NYHHWSFGKKFIQTEQNYKHGQMGLAYEIVINSSPCISYLMEENTITMQALVMAHACYGH
CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCC
NSFFKGNYLFQTWTDASSIVDYLLFAQQYITQCEEKHGVDEVEAILDSCHALMNYGVDRY
CCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
KRPEKISIAEEKIRQEDREAYLQSQVNDLWRTVPKTKQENNEEKERFPSEPQENILYFIE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCHHHHHHHHH
KHAPLLESWQRELVRIIRKISQYFYPQKQTQVMNEGWATFWHYTILNHLYDEDLVSDKFI
HCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEFLHSHTNVVAQPSYNSPYYSGINPYALGFAMFQDIRRICEEPTDEDREWFPDLAGSDW
HHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHH
LDAVHFAMHNFKDESFISQYLSPKLIREFKLFAILDDDKSKHIEISAIHDDVGYREIREK
HHHHHHHHHCCCCHHHHHHHHCHHHHHHHHEEEEEECCCCCEEEEEEECCCCCHHHHHHH
LAAQYNLSNLEPNIQVWNVDVRGDRSLILRHVPHNRIPLDKGHQEVMKHLHRLWGFDVIL
HHHHHCCCCCCCCCEEEEEEECCCHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EEVISFNRAEIISSCPKRNYYNTTI
HHHHCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]