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The map label for this gene is norR [H]

Identifier: 209695635

GI number: 209695635

Start: 2362097

End: 2363635

Strand: Reverse

Name: norR [H]

Synonym: VSAL_I2198

Alternate gene names: 209695635

Gene position: 2363635-2362097 (Counterclockwise)

Preceding gene: 209695641

Following gene: 209695634

Centisome position: 71.08

GC content: 41.46

Gene sequence:

>1539_bases
ATGAAAAACATTAAAAAAGAATGGATTCAGATAGCCTTAGATTTAACGTCTGGATTATCAAATAAAGATCGCTTTGAACG
CTTACTCTCGACGATAAGAAACGCCTTAAAATGCGATGCTTCAGCCTTGTTACTGTTCAAAAATCAATATTTTTCTCCTT
TAGCCATTAATGGTCTTGATGGTGATGTCATTGGTCGTCGCTTTTCCATTTCACAACACCCTCGTTTAGAAGCGATTGCC
AGAGCCGGTGACATCGTTCGGTTCCCACCAGACAGCGATTTACCCGATCCTTATGATGGATTAATCGCAAATAAAAAAAG
CCAGTTACACGTCCACTCCTGCATAGGCCTTCCTCTCATCGTCAATGAACGTCTCATTGGAGCGGTAACCATTGATGCAT
TCGATCCTGCCCAATTTGATAAATTCACAAATAAAGAATTACGCATCATCAGCGCATTAGCGGCAACAAGTTTGAACACC
GCCTTACTCATGGAAAGATTAGAAAAACAATCAGGAGAAAGTAGCACAGCGTCTTCTTTTGAAAGTCCACAACACCACGT
GGCCGAGATGATTGGTGAGTCTCAAGTAATGCAAGAGTTGCAAAACAACATTAACGCCGTAGCCAACACCGAATTGTCGG
TCTTAATTACAGGTGAAACGGGAGTCGGAAAAGAATTAGTCGCCAGTGCTCTGCACGAAAGATCGGCGCGTTCAAATCAA
AATTTAGTCTATTTAAACTGTGCAGCGCTACCAGAGTCGGTTGCAGAAAGTGAGTTGTTTGGTCATGTAAAAGGCGCATT
CACAGGCGCAATAAGTAACCGAAAGGGAAAGTTTGAATCCGCAGATAATGGCACGTTATTTCTTGATGAAATTGGCGAAT
TATCTTTAGCGCTGCAAGCCAAATTACTGCGTGTTTTGCAGTATGGTGATATTCAACGTATTGGGGACGATAATCACATT
AAAGTGAACACTCGAATTATTGCTGCCACCAACAAAATGCTTCATGAAGAAGTCAAGAATGGCAATTTTAGAGCCGATTT
GTATCACCGCTTGAGTGTCTTTCCCATTTTTGTTCCCCCACTAAGGGACCGAGAAAATGACATTACGATTCTCGTTGGGT
ATTTTGCAGAAAAAAGCCGCATCAAATTAGGTGCTTCAAGTTTACGTATCACTCCAGAAACGATCGCCCTTCTTAACGAT
TATTCATGGCCAGGAAACATCCGAGAGTTAGAGCATGTAATGAGCCGAGCAACCGTACTTTCTAGAGCACAGAGTAATGA
AACGGACTTAACCCTTACGCCGCTGCATTTTTCAATTAAAAAAGACACTAACTTGGAAGTAAGCCCCATTCAACAAACAG
AAAACACACTCATAGATGAAACGAAAGGATTACGCCTTGCAACCGACGAATTTCAAACACAATTAATAAAAAAAACACAT
CAAGAAAACCAACACAATTGGGCGGCTACCGCCAGAGCTTTGCAGCTTGATACAGGAAATTTACATCGTTTAGCCAAACG
CTTAAAACTAAAGGACTAA

Upstream 100 bases:

>100_bases
AAAGATAAGCCACCGAAAATGTCAATTTGACACTCATTTACTTCTGTCAAAAAGACAGTACAATAGTCAAATTGACATTA
AGAAAGAAGGTGTGACAATA

Downstream 100 bases:

>100_bases
ATCAACATAAATAACCTACATTTCACAGATATAATCTGTGATTTTAGTCTCGGATCTGTCCCATGCAAATTCTTTCTGGT
AGAATCTGCTTCAAGTTTTA

Product: anaerobic nitric oxide reductase transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKNIKKEWIQIALDLTSGLSNKDRFERLLSTIRNALKCDASALLLFKNQYFSPLAINGLDGDVIGRRFSISQHPRLEAIA
RAGDIVRFPPDSDLPDPYDGLIANKKSQLHVHSCIGLPLIVNERLIGAVTIDAFDPAQFDKFTNKELRIISALAATSLNT
ALLMERLEKQSGESSTASSFESPQHHVAEMIGESQVMQELQNNINAVANTELSVLITGETGVGKELVASALHERSARSNQ
NLVYLNCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRIGDDNHI
KVNTRIIAATNKMLHEEVKNGNFRADLYHRLSVFPIFVPPLRDRENDITILVGYFAEKSRIKLGASSLRITPETIALLND
YSWPGNIRELEHVMSRATVLSRAQSNETDLTLTPLHFSIKKDTNLEVSPIQQTENTLIDETKGLRLATDEFQTQLIKKTH
QENQHNWAATARALQLDTGNLHRLAKRLKLKD

Sequences:

>Translated_512_residues
MKNIKKEWIQIALDLTSGLSNKDRFERLLSTIRNALKCDASALLLFKNQYFSPLAINGLDGDVIGRRFSISQHPRLEAIA
RAGDIVRFPPDSDLPDPYDGLIANKKSQLHVHSCIGLPLIVNERLIGAVTIDAFDPAQFDKFTNKELRIISALAATSLNT
ALLMERLEKQSGESSTASSFESPQHHVAEMIGESQVMQELQNNINAVANTELSVLITGETGVGKELVASALHERSARSNQ
NLVYLNCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRIGDDNHI
KVNTRIIAATNKMLHEEVKNGNFRADLYHRLSVFPIFVPPLRDRENDITILVGYFAEKSRIKLGASSLRITPETIALLND
YSWPGNIRELEHVMSRATVLSRAQSNETDLTLTPLHFSIKKDTNLEVSPIQQTENTLIDETKGLRLATDEFQTQLIKKTH
QENQHNWAATARALQLDTGNLHRLAKRLKLKD
>Mature_512_residues
MKNIKKEWIQIALDLTSGLSNKDRFERLLSTIRNALKCDASALLLFKNQYFSPLAINGLDGDVIGRRFSISQHPRLEAIA
RAGDIVRFPPDSDLPDPYDGLIANKKSQLHVHSCIGLPLIVNERLIGAVTIDAFDPAQFDKFTNKELRIISALAATSLNT
ALLMERLEKQSGESSTASSFESPQHHVAEMIGESQVMQELQNNINAVANTELSVLITGETGVGKELVASALHERSARSNQ
NLVYLNCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRIGDDNHI
KVNTRIIAATNKMLHEEVKNGNFRADLYHRLSVFPIFVPPLRDRENDITILVGYFAEKSRIKLGASSLRITPETIALLND
YSWPGNIRELEHVMSRATVLSRAQSNETDLTLTPLHFSIKKDTNLEVSPIQQTENTLIDETKGLRLATDEFQTQLIKKTH
QENQHNWAATARALQLDTGNLHRLAKRLKLKD

Specific function: Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54 [H]

COG id: COG3604

COG function: function code KT; Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082152, Length=504, Percent_Identity=57.5396825396825, Blast_Score=556, Evalue=1e-160,
Organism=Escherichia coli, GI87082117, Length=239, Percent_Identity=50.6276150627615, Blast_Score=251, Evalue=8e-68,
Organism=Escherichia coli, GI1789087, Length=332, Percent_Identity=39.4578313253012, Blast_Score=244, Evalue=8e-66,
Organism=Escherichia coli, GI1790437, Length=274, Percent_Identity=48.1751824817518, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788550, Length=299, Percent_Identity=44.1471571906354, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1789233, Length=340, Percent_Identity=40, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1790299, Length=236, Percent_Identity=47.8813559322034, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI87081872, Length=326, Percent_Identity=38.9570552147239, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI1788905, Length=232, Percent_Identity=41.3793103448276, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1786524, Length=266, Percent_Identity=41.7293233082707, Blast_Score=188, Evalue=6e-49,
Organism=Escherichia coli, GI1787583, Length=230, Percent_Identity=40.4347826086956, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1789828, Length=217, Percent_Identity=36.8663594470046, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081858, Length=207, Percent_Identity=34.2995169082126, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01590 GAF; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 56952; Mature: 56952

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKKEWIQIALDLTSGLSNKDRFERLLSTIRNALKCDASALLLFKNQYFSPLAINGLD
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCC
GDVIGRRFSISQHPRLEAIARAGDIVRFPPDSDLPDPYDGLIANKKSQLHVHSCIGLPLI
CHHCCCEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEHHCCCCEE
VNERLIGAVTIDAFDPAQFDKFTNKELRIISALAATSLNTALLMERLEKQSGESSTASSF
ECCCEEEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
ESPQHHVAEMIGESQVMQELQNNINAVANTELSVLITGETGVGKELVASALHERSARSNQ
CCHHHHHHHHHCHHHHHHHHHHCCCEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
NLVYLNCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQA
CEEEEEECCCCHHHHHHHHHHHHHHHHHEHHCCCCCCCCCCCCCEEEEECHHHHHHHHHH
KLLRVLQYGDIQRIGDDNHIKVNTRIIAATNKMLHEEVKNGNFRADLYHRLSVFPIFVPP
HHHHHHHCCCHHCCCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEHHHHHHEEEEEECCC
LRDRENDITILVGYFAEKSRIKLGASSLRITPETIALLNDYSWPGNIRELEHVMSRATVL
CCCCCCCEEEEEEECCCCCCEEECCCCEEECHHHHHEEECCCCCCCHHHHHHHHHHHHHH
SRAQSNETDLTLTPLHFSIKKDTNLEVSPIQQTENTLIDETKGLRLATDEFQTQLIKKTH
HHHCCCCCCEEEEEEEEEEECCCCCEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
QENQHNWAATARALQLDTGNLHRLAKRLKLKD
HCCCCHHHHHHEEEEECCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKNIKKEWIQIALDLTSGLSNKDRFERLLSTIRNALKCDASALLLFKNQYFSPLAINGLD
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCC
GDVIGRRFSISQHPRLEAIARAGDIVRFPPDSDLPDPYDGLIANKKSQLHVHSCIGLPLI
CHHCCCEECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEHHCCCCEE
VNERLIGAVTIDAFDPAQFDKFTNKELRIISALAATSLNTALLMERLEKQSGESSTASSF
ECCCEEEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
ESPQHHVAEMIGESQVMQELQNNINAVANTELSVLITGETGVGKELVASALHERSARSNQ
CCHHHHHHHHHCHHHHHHHHHHCCCEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
NLVYLNCAALPESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQA
CEEEEEECCCCHHHHHHHHHHHHHHHHHEHHCCCCCCCCCCCCCEEEEECHHHHHHHHHH
KLLRVLQYGDIQRIGDDNHIKVNTRIIAATNKMLHEEVKNGNFRADLYHRLSVFPIFVPP
HHHHHHHCCCHHCCCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEHHHHHHEEEEEECCC
LRDRENDITILVGYFAEKSRIKLGASSLRITPETIALLNDYSWPGNIRELEHVMSRATVL
CCCCCCCEEEEEEECCCCCCEEECCCCEEECHHHHHEEECCCCCCCHHHHHHHHHHHHHH
SRAQSNETDLTLTPLHFSIKKDTNLEVSPIQQTENTLIDETKGLRLATDEFQTQLIKKTH
HHHCCCCCCEEEEEEEEEEECCCCCEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
QENQHNWAATARALQLDTGNLHRLAKRLKLKD
HCCCCHHHHHHEEEEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA