| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695584
Identifier: 209695584
GI number: 209695584
Start: 2299874
End: 2300650
Strand: Reverse
Name: 209695584
Synonym: VSAL_I2143
Alternate gene names: NA
Gene position: 2300650-2299874 (Counterclockwise)
Preceding gene: 209695585
Following gene: 209695583
Centisome position: 69.19
GC content: 35.14
Gene sequence:
>777_bases GTGTCTCGTTATAGTTTGCCTCTCATCGATAAAAACTCCCCATTTCAAGCTGTATTTGAACCGGCAATTAAAGACTTGAT GGTGCATGTTCGTTCTGCTGCTCCTAAGTCAATCCACAGTATTTATTTATATGGTAGCGTGGCAAGACGAGAGGCGATTC CGGGCCGTTCAAATTTAGATGTTACTTTAATTACCACCGTTCCTTTAACAAACAAAGAACAAACATTAATCAATACAATT AAGGTTCGTTTTCAGTCTAAATATCCACAAATTACCGGGGTTACTTTCAACATCGGTACTGCATCAGAAGTTCTGCAATT AGAATCTATATTCAGTTGGGGATTTTGGTTACGTCACTGTTGTGTTTGTATTTTTGGTGATGATCTTTCTACTCGTTTTG GTGATTTTGAACCGAGCTGGGAAATTGCTAAAAACATGAATATGGACATTGAAGAATGGTTACAAGTGTACATAAAAAAA ATCACCGCTAGCCAAGATATTAATACTCAAGTTCAATTACAGAAAACCATAGCAAAGAAATTATTAAGAAGTTGTTACTC TCTTATTATGCATAAAGATAAGGGCTGGTATGATCATCCTATTTTATGTGCACGCAAATTTCTAGAATATTATCCTGAAA AGCAGACAGAAATAGAACGCGTTGTTTTATTATTAAAAGGGCGAAAAGTACCTAAGCGCTCAGTTCTTGTTTTATTAAAA GAATTTGGAGATTGGGTTGTGAGCGAATTTAATAACATAGAAAGAAGAATAGGTTAA
Upstream 100 bases:
>100_bases TTTAACTCTTAAAAAACCGGCTTTTATTGCCGGTTTTTTATTGCTATTTTTCTGTTTAATCGCGATCATGGCGCTTCATA TATGCTTTTAGGAGTTCTTT
Downstream 100 bases:
>100_bases CGATTGAACTCTCCTCACTGCGGCTTTTTATTAACTCGTCAGAATAAAGACATCAGAGACCATTCCCTCGTCGATTTATG GGTTAAATGTGATGACCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSRYSLPLIDKNSPFQAVFEPAIKDLMVHVRSAAPKSIHSIYLYGSVARREAIPGRSNLDVTLITTVPLTNKEQTLINTI KVRFQSKYPQITGVTFNIGTASEVLQLESIFSWGFWLRHCCVCIFGDDLSTRFGDFEPSWEIAKNMNMDIEEWLQVYIKK ITASQDINTQVQLQKTIAKKLLRSCYSLIMHKDKGWYDHPILCARKFLEYYPEKQTEIERVVLLLKGRKVPKRSVLVLLK EFGDWVVSEFNNIERRIG
Sequences:
>Translated_258_residues MSRYSLPLIDKNSPFQAVFEPAIKDLMVHVRSAAPKSIHSIYLYGSVARREAIPGRSNLDVTLITTVPLTNKEQTLINTI KVRFQSKYPQITGVTFNIGTASEVLQLESIFSWGFWLRHCCVCIFGDDLSTRFGDFEPSWEIAKNMNMDIEEWLQVYIKK ITASQDINTQVQLQKTIAKKLLRSCYSLIMHKDKGWYDHPILCARKFLEYYPEKQTEIERVVLLLKGRKVPKRSVLVLLK EFGDWVVSEFNNIERRIG >Mature_257_residues SRYSLPLIDKNSPFQAVFEPAIKDLMVHVRSAAPKSIHSIYLYGSVARREAIPGRSNLDVTLITTVPLTNKEQTLINTIK VRFQSKYPQITGVTFNIGTASEVLQLESIFSWGFWLRHCCVCIFGDDLSTRFGDFEPSWEIAKNMNMDIEEWLQVYIKKI TASQDINTQVQLQKTIAKKLLRSCYSLIMHKDKGWYDHPILCARKFLEYYPEKQTEIERVVLLLKGRKVPKRSVLVLLKE FGDWVVSEFNNIERRIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29879; Mature: 29748
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRYSLPLIDKNSPFQAVFEPAIKDLMVHVRSAAPKSIHSIYLYGSVARREAIPGRSNLD CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEHHHHHHCCCCCCCCC VTLITTVPLTNKEQTLINTIKVRFQSKYPQITGVTFNIGTASEVLQLESIFSWGFWLRHC EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH CVCIFGDDLSTRFGDFEPSWEIAKNMNMDIEEWLQVYIKKITASQDINTQVQLQKTIAKK EEEEECCCHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LLRSCYSLIMHKDKGWYDHPILCARKFLEYYPEKQTEIERVVLLLKGRKVPKRSVLVLLK HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH EFGDWVVSEFNNIERRIG HHHHHHHHHHHHHHHHCC >Mature Secondary Structure SRYSLPLIDKNSPFQAVFEPAIKDLMVHVRSAAPKSIHSIYLYGSVARREAIPGRSNLD CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEHHHHHHCCCCCCCCC VTLITTVPLTNKEQTLINTIKVRFQSKYPQITGVTFNIGTASEVLQLESIFSWGFWLRHC EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH CVCIFGDDLSTRFGDFEPSWEIAKNMNMDIEEWLQVYIKKITASQDINTQVQLQKTIAKK EEEEECCCHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LLRSCYSLIMHKDKGWYDHPILCARKFLEYYPEKQTEIERVVLLLKGRKVPKRSVLVLLK HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH EFGDWVVSEFNNIERRIG HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA