| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is pgsA [H]
Identifier: 209695580
GI number: 209695580
Start: 2294246
End: 2294800
Strand: Reverse
Name: pgsA [H]
Synonym: VSAL_I2139
Alternate gene names: 209695580
Gene position: 2294800-2294246 (Counterclockwise)
Preceding gene: 209695581
Following gene: 209695579
Centisome position: 69.01
GC content: 39.28
Gene sequence:
>555_bases ATGCGATTAACGATACCAAATATACTCACGTTTATCCGACTTGCACTTATTCCAGTGTTTGTTGTTGTTTTCTATTTACC TTATGAATGGTCTGCAGTTGCTGCTGCGATGGTTTTTTGGGTAGCAGGCTTTACTGATTGGTTGGATGGGTTACTAGCAA GAAAGCTAGGACAAACCTCTCGATTTGGTGCCTTTTTAGATCCTGTAGCAGATAAAGTAATAGTTGCTGCGGCCTTAATT TTAATTACCGAACATTATCATAGTATTTGGATCACAATTCCTGCGATTACCATGATAGGGCGTGAACTGATTATTTCTGC TTTAAGAGAATGGATGGCAGAAATAGGTAAACGTGCAAGTGTTGCTGTTTCTTGGGTTGGAAAAGTTAAAACCGTTTCTC AAATGTTCGCATTGTGGGTTTTAATTTGGCGTTATGATGATTGGATGGTGTGGGTTGGTTATGTTGCACTTTATGTAGCC ACCATACTAACGTACTGGTCAATGATGCAATATCTTGCTGCAGCGAAAGATGATCTACTTAATGCTGATGATTAG
Upstream 100 bases:
>100_bases CAGGTATTAGCCGCTCTTTAGCAGAAAAAATACAGGATGCGTTGAAACAAGGGTAAAAAAAGCGCACCATAGACCCGCGT ACCAAAACTAAAGAATTATT
Downstream 100 bases:
>100_bases TCAGTGATTGAGATGAAGAAGCGAACTTAGGTTCGCTTTTTTTGTATTTATAACAAAATAAAGTATAGAGTTTTGATATT GCTGCTTTTTATTCTTAGTT
Product: cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase)
Products: NA
Alternate protein names: Phosphatidylglycerophosphate synthase; PGP synthase [H]
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MRLTIPNILTFIRLALIPVFVVVFYLPYEWSAVAAAMVFWVAGFTDWLDGLLARKLGQTSRFGAFLDPVADKVIVAAALI LITEHYHSIWITIPAITMIGRELIISALREWMAEIGKRASVAVSWVGKVKTVSQMFALWVLIWRYDDWMVWVGYVALYVA TILTYWSMMQYLAAAKDDLLNADD
Sequences:
>Translated_184_residues MRLTIPNILTFIRLALIPVFVVVFYLPYEWSAVAAAMVFWVAGFTDWLDGLLARKLGQTSRFGAFLDPVADKVIVAAALI LITEHYHSIWITIPAITMIGRELIISALREWMAEIGKRASVAVSWVGKVKTVSQMFALWVLIWRYDDWMVWVGYVALYVA TILTYWSMMQYLAAAKDDLLNADD >Mature_184_residues MRLTIPNILTFIRLALIPVFVVVFYLPYEWSAVAAAMVFWVAGFTDWLDGLLARKLGQTSRFGAFLDPVADKVIVAAALI LITEHYHSIWITIPAITMIGRELIISALREWMAEIGKRASVAVSWVGKVKTVSQMFALWVLIWRYDDWMVWVGYVALYVA TILTYWSMMQYLAAAKDDLLNADD
Specific function: This protein catalyzes the committed step to the synthesis of the acidic phospholipids [H]
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Escherichia coli, GI1788220, Length=181, Percent_Identity=62.9834254143646, Blast_Score=236, Evalue=7e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000462 - InterPro: IPR004570 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.5 [H]
Molecular weight: Translated: 20939; Mature: 20939
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTIPNILTFIRLALIPVFVVVFYLPYEWSAVAAAMVFWVAGFTDWLDGLLARKLGQTS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RFGAFLDPVADKVIVAAALILITEHYHSIWITIPAITMIGRELIISALREWMAEIGKRAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VAVSWVGKVKTVSQMFALWVLIWRYDDWMVWVGYVALYVATILTYWSMMQYLAAAKDDLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NADD CCCC >Mature Secondary Structure MRLTIPNILTFIRLALIPVFVVVFYLPYEWSAVAAAMVFWVAGFTDWLDGLLARKLGQTS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RFGAFLDPVADKVIVAAALILITEHYHSIWITIPAITMIGRELIISALREWMAEIGKRAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VAVSWVGKVKTVSQMFALWVLIWRYDDWMVWVGYVALYVATILTYWSMMQYLAAAKDDLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NADD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA