Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695549

Identifier: 209695549

GI number: 209695549

Start: 2253965

End: 2254696

Strand: Reverse

Name: 209695549

Synonym: VSAL_I2105

Alternate gene names: NA

Gene position: 2254696-2253965 (Counterclockwise)

Preceding gene: 209695553

Following gene: 209695548

Centisome position: 67.81

GC content: 39.75

Gene sequence:

>732_bases
ATGGGCATCATGGCATACGCAAATTTTAATATAATCGATTGGCACGCAATTTCGACTGGATTAGGAAATCGAAGTGATTG
GCTTCTATGGTCAGAAAGTGATTTTACTTGGCCAGAAGACGGTAAAATACCGGTTGATAAAATTCCTGCGATGGCTCGAC
GTCGAATGAGTTCATTGAGTAAATTAGCGGTTCAAACTGCCTTAACGTTCTCTGAACATAATTCGATAGATTATTTGGTT
TTTGCAAGCCGCCATGGTGAATTAACCAGAACCACGACATTACTTGAAGACATTTTAAAAGGAGAAGATGCCTCTCCAAT
GGCGTTCTCTCAATCGGTTCATAATACGGCCTCTGGTTTATTTACGATCAGTGCCAAAAAACCAATTCCGGTGACCTCTA
TTGCCGCCGGAGAAAATACCTTTCACTCTGCATTAGTTGAAGCCGCTGCCTATCTTTATGAAAATCCAGACCATAATGTA
TTAGTGGTGGATTTTGATGAACCGACGTCTTCCCATTATAAAGAATTTGAAACTGACACTTATCAAGGCTACGCATTAGG
ATTGATATTAAGCAGTGGACAAGATATTTCGATTGCATGGAGCAATAAACCATCAATCAGTTCTTCATCCTTGCCTCATG
GGTTGCAATGTATTGCTAACTTAGTAGGATCAAAGGATAAATGGAATGTTGATAGCAAATCAACTCAATGGACATGGACT
CGTATTAAGTAG

Upstream 100 bases:

>100_bases
TATTTACCGTATGCTTTGCCGCTTTTGTATTTGCGCCAAGTCACTGAATTCATATATCCTATACGACTATAGTCACAAAT
TGTAATGTTTTTACTATTAG

Downstream 100 bases:

>100_bases
AATGACAGTACTCTCACGAATAGATAAATATTGGCGAATTATAGCGACGGGAATTTGTTTTTCGTTGTTTGGTATTGGCG
CTCTTTGTTTAACTTTTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLV
FASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNV
LVVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT
RIK

Sequences:

>Translated_243_residues
MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLV
FASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNV
LVVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT
RIK
>Mature_242_residues
GIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLSKLAVQTALTFSEHNSIDYLVF
ASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGLFTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVL
VVDFDEPTSSHYKEFETDTYQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWTR
IK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26877; Mature: 26746

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLS
CCEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KLAVQTALTFSEHNSIDYLVFASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGL
HHHHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCE
FTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVLVVDFDEPTSSHYKEFETDT
EEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCC
YQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT
CCCEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE
RIK
EEC
>Mature Secondary Structure 
GIMAYANFNIIDWHAISTGLGNRSDWLLWSESDFTWPEDGKIPVDKIPAMARRRMSSLS
CEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KLAVQTALTFSEHNSIDYLVFASRHGELTRTTTLLEDILKGEDASPMAFSQSVHNTASGL
HHHHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCE
FTISAKKPIPVTSIAAGENTFHSALVEAAAYLYENPDHNVLVVDFDEPTSSHYKEFETDT
EEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCC
YQGYALGLILSSGQDISIAWSNKPSISSSSLPHGLQCIANLVGSKDKWNVDSKSTQWTWT
CCCEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE
RIK
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA