Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695539

Identifier: 209695539

GI number: 209695539

Start: 2246035

End: 2246655

Strand: Reverse

Name: 209695539

Synonym: VSAL_I2095

Alternate gene names: NA

Gene position: 2246655-2246035 (Counterclockwise)

Preceding gene: 209695540

Following gene: 209695538

Centisome position: 67.57

GC content: 36.39

Gene sequence:

>621_bases
ATGGGTAACAGAGTGAATAGAAAAACAGCTTGGATAGCGGCATTTTTTTTATTATTTAGTGTGAATAGCTTTGCATTTAG
TGTCGATGATTTACAGCAACAATTATCCCAATCAACACTGGTTCGTGGTGAGTTTAGTCAAGTCAGAACCATGCAGATGT
TTAACCACCCTTTAAGTACGTCTGGCACTTTTTTGCTAGAACATGATAAAGGGTTACTCTGGCAACAAAACACACCATTT
CCAATTTATTTAACGCTAACAAAGAATAAGTTACGCCAATCGATTAATGGGGAATCTCAGGTTATGAATGATTCTGAAAA
CCCAATGGCGTTTTATTTTACTCGTTTATTTCTGTCCTTATTCAAAGGTGACACTAAAGCGATTCAAGAAAATTTCACCA
TGACATTAACAGGCTCAAAAGAAGGGTGGATTTTATTGTTAACCCCGAAATCTGCACCGATTAACAGTGTGTTTGAAACG
ATTAAAATTGAAGGCGGTGTGTATTTGAATCGTGTTGTTTTAAGAGAAGTCCGTGGTGACGTTACTGAGATGATATTTTC
AAACCAATCATCAACACCTAGTGTATTAACAGAAGAAGAGTTACGTGCCTTTACTTTCTAA

Upstream 100 bases:

>100_bases
ACAAAAGGACACACGATGCAAGTAGCTGTCAGTATTGAAAGCGATGAGATGTGTTTTGTTTCACCTCATGTATTTACCGA
TAAAGTAGAGGCTTACCATA

Downstream 100 bases:

>100_bases
TTGTATGAAATCGGCCTTAATGAAACCACGACAACTTGCTGTCGGTTGGTTATTGGTATTGAGTGTGATTACAGGGTTGT
TTGGTTATCAATGGTACTCA

Product: outer membrane protein

Products: NA

Alternate protein names: Outer-Membrane Lipoprotein Carrier Protein; Signal Peptide Protein; Outer Membrane Protein; Outer Membrane Lipocarrier Protein LolA Family Protein; Outer Membrane Lipoprotein Carrier Protein; Flagellum-Specific ATP Synthase; Exported Lipoprotein; Secreted Protein

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPF
PIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFET
IKIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF

Sequences:

>Translated_206_residues
MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPF
PIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFET
IKIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF
>Mature_205_residues
GNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLSTSGTFLLEHDKGLLWQQNTPFP
IYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSLFKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETI
KIEGGVYLNRVVLREVRGDVTEMIFSNQSSTPSVLTEEELRAFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23488; Mature: 23357

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLST
CCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
SGTFLLEHDKGLLWQQNTPFPIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSL
CCCEEEECCCCCEEECCCCCEEEEEEEHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH
FKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETIKIEGGVYLNRVVLREVRGD
HCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHHHH
VTEMIFSNQSSTPSVLTEEELRAFTF
HHHHHHCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
GNRVNRKTAWIAAFFLLFSVNSFAFSVDDLQQQLSQSTLVRGEFSQVRTMQMFNHPLST
CCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
SGTFLLEHDKGLLWQQNTPFPIYLTLTKNKLRQSINGESQVMNDSENPMAFYFTRLFLSL
CCCEEEECCCCCEEECCCCCEEEEEEEHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHH
FKGDTKAIQENFTMTLTGSKEGWILLLTPKSAPINSVFETIKIEGGVYLNRVVLREVRGD
HCCCHHHHHCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHEECCCCHHHHHHHHHHHHH
VTEMIFSNQSSTPSVLTEEELRAFTF
HHHHHHCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA