| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695143
Identifier: 209695143
GI number: 209695143
Start: 1746239
End: 1746901
Strand: Reverse
Name: 209695143
Synonym: VSAL_I1644
Alternate gene names: NA
Gene position: 1746901-1746239 (Counterclockwise)
Preceding gene: 209695144
Following gene: 209695142
Centisome position: 52.54
GC content: 33.03
Gene sequence:
>663_bases GTGGCTGGTGAACGTTCTAAATCGATTGGTGAAGTTGGTGAAAGTATTGCAGAAAACTTTTTCAATAAAATTGGCTGGGG AATGCCTCCTAAAGGCGTTTATTTTCAATGCATTAAACCTAAGAAGCATGCTCTGCCTACCGCTAAAAATGGAGAGAAAA CTCAGCATGGCATAGATTTTCAGGTATCTTACAAATCTTCATTAGAATCAGATACATTGAACCATTTAGTCATCTCAGTA AAGCATCTAAAAGATAGTAAATATCCATCTTCTGCAACTCAAAAATTTAAAGGTTACATAAGCGACTTAGTCCATACAAC TGAATGTTTTCAACGTTCTAGCGAACGTCGAGAAGTTAATCTTGGATATAAAGGGTGTAAGCAGATTAACGACATTCCAG TGTTATTTTATATCTCTAGTAAAGATCCTGAAGATTTTGATTTTACAATCAAACTACAAACAAGTCGTTTTATGAACGAT TATGATATAAAAGAACTATATGTTGTTGATAATAGAAAGGTTTCTTTTATTCTCAATGTATTGACATACATTGAAAGCCA TTATTCTGATTGGGAGTGGTATTTTTATCATCCTTTGACGGGTATGAATATTGCTGATTCTACAATCATGCAACATGATA AAAAATGCAAGTTGAGTTTTTAA
Upstream 100 bases:
>100_bases GGCGTTATGCGTGCTTGTCGACAGACTTACGTATTAATAGTAGCAGTAAGTATTGCTTATCCATTATAATCATAGGGTTA TATAATTATAAGGAATTATT
Downstream 100 bases:
>100_bases CTAGCCGGTTCATTCCATTTCTACTTAAAAAGAAAATAGGAGAACATGAAACTTGTAAATTTTTAGTTGCCTCAATAGAT GATTTTACCGAGAGTAATCT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MAGERSKSIGEVGESIAENFFNKIGWGMPPKGVYFQCIKPKKHALPTAKNGEKTQHGIDFQVSYKSSLESDTLNHLVISV KHLKDSKYPSSATQKFKGYISDLVHTTECFQRSSERREVNLGYKGCKQINDIPVLFYISSKDPEDFDFTIKLQTSRFMND YDIKELYVVDNRKVSFILNVLTYIESHYSDWEWYFYHPLTGMNIADSTIMQHDKKCKLSF
Sequences:
>Translated_220_residues MAGERSKSIGEVGESIAENFFNKIGWGMPPKGVYFQCIKPKKHALPTAKNGEKTQHGIDFQVSYKSSLESDTLNHLVISV KHLKDSKYPSSATQKFKGYISDLVHTTECFQRSSERREVNLGYKGCKQINDIPVLFYISSKDPEDFDFTIKLQTSRFMND YDIKELYVVDNRKVSFILNVLTYIESHYSDWEWYFYHPLTGMNIADSTIMQHDKKCKLSF >Mature_219_residues AGERSKSIGEVGESIAENFFNKIGWGMPPKGVYFQCIKPKKHALPTAKNGEKTQHGIDFQVSYKSSLESDTLNHLVISVK HLKDSKYPSSATQKFKGYISDLVHTTECFQRSSERREVNLGYKGCKQINDIPVLFYISSKDPEDFDFTIKLQTSRFMNDY DIKELYVVDNRKVSFILNVLTYIESHYSDWEWYFYHPLTGMNIADSTIMQHDKKCKLSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25455; Mature: 25324
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGERSKSIGEVGESIAENFFNKIGWGMPPKGVYFQCIKPKKHALPTAKNGEKTQHGIDF CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCE QVSYKSSLESDTLNHLVISVKHLKDSKYPSSATQKFKGYISDLVHTTECFQRSSERREVN EEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE LGYKGCKQINDIPVLFYISSKDPEDFDFTIKLQTSRFMNDYDIKELYVVDNRKVSFILNV CCHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEHHHCCCCCCCEEEEEECCCHHHHHHHH LTYIESHYSDWEWYFYHPLTGMNIADSTIMQHDKKCKLSF HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCC >Mature Secondary Structure AGERSKSIGEVGESIAENFFNKIGWGMPPKGVYFQCIKPKKHALPTAKNGEKTQHGIDF CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCE QVSYKSSLESDTLNHLVISVKHLKDSKYPSSATQKFKGYISDLVHTTECFQRSSERREVN EEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE LGYKGCKQINDIPVLFYISSKDPEDFDFTIKLQTSRFMNDYDIKELYVVDNRKVSFILNV CCHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEHHHCCCCCCCEEEEEECCCHHHHHHHH LTYIESHYSDWEWYFYHPLTGMNIADSTIMQHDKKCKLSF HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA