| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695142
Identifier: 209695142
GI number: 209695142
Start: 1745949
End: 1746257
Strand: Reverse
Name: 209695142
Synonym: VSAL_I1643
Alternate gene names: NA
Gene position: 1746257-1745949 (Counterclockwise)
Preceding gene: 209695143
Following gene: 209695141
Centisome position: 52.52
GC content: 31.72
Gene sequence:
>309_bases ATGCAAGTTGAGTTTTTAACTAGCCGGTTCATTCCATTTCTACTTAAAAAGAAAATAGGAGAACATGAAACTTGTAAATT TTTAGTTGCCTCAATAGATGATTTTACCGAGAGTAATCTTTCTAAATTGATTACGTATTGTAGAAAAAATACAAATGATA GTGTAAGTGATGTGGAAATTTTAACATCAGATTACTTCCCAGATGATCATGATCGGATTAAGAGAAAAGTTCTTGCCGCT CATGAAGCTGAACTAAATATCACTTTAGGAAACTATAAGCCTAACTTTAGGAGTTTAGCTAATGTCTGA
Upstream 100 bases:
>100_bases CATACATTGAAAGCCATTATTCTGATTGGGAGTGGTATTTTTATCATCCTTTGACGGGTATGAATATTGCTGATTCTACA ATCATGCAACATGATAAAAA
Downstream 100 bases:
>100_bases TTTGTTTTTTATTCCAACTGGTGATTATTTAAGACAGTTTATTGGCAATCCAATGATTAAAGCTGCTGATATCCGTGAAA TTTTAAAAAGAAGAGGTAAT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 102; Mature: 102
Protein sequence:
>102_residues MQVEFLTSRFIPFLLKKKIGEHETCKFLVASIDDFTESNLSKLITYCRKNTNDSVSDVEILTSDYFPDDHDRIKRKVLAA HEAELNITLGNYKPNFRSLANV
Sequences:
>Translated_102_residues MQVEFLTSRFIPFLLKKKIGEHETCKFLVASIDDFTESNLSKLITYCRKNTNDSVSDVEILTSDYFPDDHDRIKRKVLAA HEAELNITLGNYKPNFRSLANV >Mature_102_residues MQVEFLTSRFIPFLLKKKIGEHETCKFLVASIDDFTESNLSKLITYCRKNTNDSVSDVEILTSDYFPDDHDRIKRKVLAA HEAELNITLGNYKPNFRSLANV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11770; Mature: 11770
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVEFLTSRFIPFLLKKKIGEHETCKFLVASIDDFTESNLSKLITYCRKNTNDSVSDVEI CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LTSDYFPDDHDRIKRKVLAAHEAELNITLGNYKPNFRSLANV HHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCC >Mature Secondary Structure MQVEFLTSRFIPFLLKKKIGEHETCKFLVASIDDFTESNLSKLITYCRKNTNDSVSDVEI CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LTSDYFPDDHDRIKRKVLAAHEAELNITLGNYKPNFRSLANV HHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA