| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is ygjV [C]
Identifier: 209695099
GI number: 209695099
Start: 1703556
End: 1704059
Strand: Reverse
Name: ygjV [C]
Synonym: VSAL_I1596
Alternate gene names: 209695099
Gene position: 1704059-1703556 (Counterclockwise)
Preceding gene: 209695100
Following gene: 209695097
Centisome position: 51.25
GC content: 32.54
Gene sequence:
>504_bases ATGTCATTATTTTTTATTTCTCAAGTATTAGTGGCAATTGCTATCATTTTCGATTTGATGTCTTTTCAGTTTAAAGAAAG AAAAAGCATTGTTGCTTGTTTGTTTTTTTCTGGGATTTTAATTTCCAGTCATTTTTATCTACTTGAACAATGGACCGCTG CAAGCTTAATGGCTATTGCAACTATTCGTTATTTAATCAGTATTTTTTCTACATCTGCAAAATTAAAATACCTGTTTTAT TCCGCATCAATCCTTACAACGGCATTCACTTATTCTGGGCTAACTAGTGTAATTAGTTGTTTAGGTTCACTTTTTCAAAC TGCAGCAGCTTTTAATAAAGAAGATAAGCGTTTAAGAGAGTTGATGGTAGTAGGAACGAGTTTCTGGCTTTTAAATAACT ACTTAATTGGCTCACCAACGGCTGTTCTTATGGAAACGTTGTTTATTGGTAGTAATTTAATTGGCTATTATCGCCATTAC TACCGTAAGAGTGAAATGGTATGA
Upstream 100 bases:
>100_bases GAAATTAATGGTTTTGGGGTATTGAATTAAATGGTTACTTTAAATACCATTAATTGAAACTAACGTGTTGTATATTTTAT GTTTATGAAAAGGGTATGTA
Downstream 100 bases:
>100_bases AAATAGGTAAGATGAAATTAGTTATAACGGGTATCTGAATATATTTTTTTTATCAACGAAGCTTGTTCAGATTCACTAAT GCCATCTTTGGTTAACAGAA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFY SASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHY YRKSEMV
Sequences:
>Translated_167_residues MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFY SASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHY YRKSEMV >Mature_166_residues SLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFYS ASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYY RKSEMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18945; Mature: 18813
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIRYLISIFSTSAKLKYLFYSASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYYRKSEMV HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIRYLISIFSTSAKLKYLFYSASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYYRKSEMV HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA