| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695065
Identifier: 209695065
GI number: 209695065
Start: 1674517
End: 1674972
Strand: Reverse
Name: 209695065
Synonym: VSAL_I1562
Alternate gene names: NA
Gene position: 1674972-1674517 (Counterclockwise)
Preceding gene: 209695080
Following gene: 209695064
Centisome position: 50.37
GC content: 34.65
Gene sequence:
>456_bases ATGGCGATAGAAAAGTTAACAGGCCCACGTTTATTTCAACTTATATTCTTATTAGTTGTGTTAATTTCAGCATTTACATG GAGAACAATTACCTATGAAGAAAATAATCCGATTAAATCAACTATAAAAACAACCGCTTTATGCGATATATCAAAGCAAG CCTGTTCATTTAATGTAGACGGAAAACAGGTTAGTATTGATGTCGAAAAAAGACCAATTATGCAACATGCTACACTGAGG TTGTTAACGGATGGTTTAGATTCAAACTGGATCGCAGAAGCGACAAGTGTAGGTATGCAAATGGGATCTCTAAAGTTTAC AATACCAACAGAGCTTGAACAGCAAATGTCATACTCAACTTTTGTACCTCAATGCACACATAATAAAATGACATGGCAAG TAAATTTCTCAAACGCCGAGAAAGGCATAAGTGTGACATTTACTTCAGAAAAATAA
Upstream 100 bases:
>100_bases TCACTTCAAAAATGAATCATAGTTGATGCCCGTAGTAAGTTTACGGTTAAGCAACATTTTTTCTTTTTTTTTGAACTAGA TAACACAGGTTTTTATACTA
Downstream 100 bases:
>100_bases AACATATCAATAGGTTATGATTTAAATGCCTATTTAATAGGCATTCACAGGTAATTATCTTTGAGTGGCATAATTAAGTA ATGAAAATTGGACAATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MAIEKLTGPRLFQLIFLLVVLISAFTWRTITYEENNPIKSTIKTTALCDISKQACSFNVDGKQVSIDVEKRPIMQHATLR LLTDGLDSNWIAEATSVGMQMGSLKFTIPTELEQQMSYSTFVPQCTHNKMTWQVNFSNAEKGISVTFTSEK
Sequences:
>Translated_151_residues MAIEKLTGPRLFQLIFLLVVLISAFTWRTITYEENNPIKSTIKTTALCDISKQACSFNVDGKQVSIDVEKRPIMQHATLR LLTDGLDSNWIAEATSVGMQMGSLKFTIPTELEQQMSYSTFVPQCTHNKMTWQVNFSNAEKGISVTFTSEK >Mature_150_residues AIEKLTGPRLFQLIFLLVVLISAFTWRTITYEENNPIKSTIKTTALCDISKQACSFNVDGKQVSIDVEKRPIMQHATLRL LTDGLDSNWIAEATSVGMQMGSLKFTIPTELEQQMSYSTFVPQCTHNKMTWQVNFSNAEKGISVTFTSEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17016; Mature: 16885
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEKLTGPRLFQLIFLLVVLISAFTWRTITYEENNPIKSTIKTTALCDISKQACSFNVD CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCHHHEEECCC GKQVSIDVEKRPIMQHATLRLLTDGLDSNWIAEATSVGMQMGSLKFTIPTELEQQMSYST CCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCEEEECCHHHHHHCCHHH FVPQCTHNKMTWQVNFSNAEKGISVTFTSEK CCCCCCCCEEEEEEECCCCCCCEEEEEECCC >Mature Secondary Structure AIEKLTGPRLFQLIFLLVVLISAFTWRTITYEENNPIKSTIKTTALCDISKQACSFNVD CCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCHHHEEECCC GKQVSIDVEKRPIMQHATLRLLTDGLDSNWIAEATSVGMQMGSLKFTIPTELEQQMSYST CCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCEEEECCHHHHHHCCHHH FVPQCTHNKMTWQVNFSNAEKGISVTFTSEK CCCCCCCCEEEEEEECCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA