| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695064
Identifier: 209695064
GI number: 209695064
Start: 1673234
End: 1674418
Strand: Reverse
Name: 209695064
Synonym: VSAL_I1561
Alternate gene names: NA
Gene position: 1674418-1673234 (Counterclockwise)
Preceding gene: 209695065
Following gene: 209695063
Centisome position: 50.36
GC content: 35.78
Gene sequence:
>1185_bases ATGCAGATAATTACCAGTGTTTCTCAATTAAATGACTCAACAGAAGCGATAAAAGAGTGTGTTAGTCAACTCAATATATC GACCATACCACCAAGTATCATTCTTTGTTATTTCACAGAGAATTATAACAGTAAGAAGATTCTTGATTATTTAAAAGAGC AATTCCCTAACAGTAAAATACATGGGTGTACTTCATGTAAAGGAGTAATGACGGATGATGGTTTCTCTTCTCATTCATCA CTTGGATTATGGGTATTAACTGATGTCAAAGGAAGTTATGGCACTGGAATTCTGGAATTACCAAGTGAATTTCATGATGT TAGTCAGTTAACTAAGCAGGTTTTAAATCAAGCGATTGCTGATAGCACGAGATATGGTGAGTTGCCATCATTAATATTAT TACATGCAACACCAGGGTATGAAGAAAAAATAATTGAAACAATTGATGCATTTTTTGGTACACCAGTACCATTAATTGGC GGTTCTGCTGCGGATGATTACGCAAAGGGAAACTGGTCCATTTTTACTCAGCAGGGTGAAACAAACCAAGGTATTTCAAT TTCTGTATTTTACCCAACGTGTAAAGTTTCTTATTCATTTCATTCGGGTTATGCCAATTCTGGTATATCAGGAATAGCGA CAAAAACCAATGGCCGAACAATATATGAAATTGATAATAAACCGGTTATTGATGTTTATAAAGAATGGACAGAAATACCA ATGCAAATTGGGGATACTAAGAATCTGTTAGAACGAGTGACCCAATACCCGTTGGGAAGAGTAGCAGGAACTATGTACTC GGTACCTTATTTTAAATTAGCTCATCCAGTGAAATTTACTCATGATGGAGGGATGGAGTGCTTCGCTAAAATAAATGAAG GGGAAGAATTATTCCTAATGATAGGTGATACAGAGCAAATTATTTCTCGACCTAAAAGAGTGATCGATTCCGCTATCTGC ATGAAAAACGATAAATTTGAACCTGTTGGAGGGATAAATATTTTTTGCGCTGGTTCAATGATGCATATTAATACGTACAT GTCAGATGTTTGCCAGTCACTAAATGATGCTATGCATAATACCTCTTATATTTGTCCATTTACTTTTGGCGAACAAGGTC GATTTACTGGTGGAGAAAATGCCCACGGTAATTTGATGGTTTCAGCTGTTTTATTCCATTATTAG
Upstream 100 bases:
>100_bases AAAACATATCAATAGGTTATGATTTAAATGCCTATTTAATAGGCATTCACAGGTAATTATCTTTGAGTGGCATAATTAAG TAATGAAAATTGGACAATTT
Downstream 100 bases:
>100_bases GTGCATAAAGTGAAGGACTACACGGAAAAAGAACAGCTTCAGGAAGCATTATTAGAATTAAAACGGAGTAAAGAAAGAGA GGCGCATTTATACAAAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MQIITSVSQLNDSTEAIKECVSQLNISTIPPSIILCYFTENYNSKKILDYLKEQFPNSKIHGCTSCKGVMTDDGFSSHSS LGLWVLTDVKGSYGTGILELPSEFHDVSQLTKQVLNQAIADSTRYGELPSLILLHATPGYEEKIIETIDAFFGTPVPLIG GSAADDYAKGNWSIFTQQGETNQGISISVFYPTCKVSYSFHSGYANSGISGIATKTNGRTIYEIDNKPVIDVYKEWTEIP MQIGDTKNLLERVTQYPLGRVAGTMYSVPYFKLAHPVKFTHDGGMECFAKINEGEELFLMIGDTEQIISRPKRVIDSAIC MKNDKFEPVGGINIFCAGSMMHINTYMSDVCQSLNDAMHNTSYICPFTFGEQGRFTGGENAHGNLMVSAVLFHY
Sequences:
>Translated_394_residues MQIITSVSQLNDSTEAIKECVSQLNISTIPPSIILCYFTENYNSKKILDYLKEQFPNSKIHGCTSCKGVMTDDGFSSHSS LGLWVLTDVKGSYGTGILELPSEFHDVSQLTKQVLNQAIADSTRYGELPSLILLHATPGYEEKIIETIDAFFGTPVPLIG GSAADDYAKGNWSIFTQQGETNQGISISVFYPTCKVSYSFHSGYANSGISGIATKTNGRTIYEIDNKPVIDVYKEWTEIP MQIGDTKNLLERVTQYPLGRVAGTMYSVPYFKLAHPVKFTHDGGMECFAKINEGEELFLMIGDTEQIISRPKRVIDSAIC MKNDKFEPVGGINIFCAGSMMHINTYMSDVCQSLNDAMHNTSYICPFTFGEQGRFTGGENAHGNLMVSAVLFHY >Mature_394_residues MQIITSVSQLNDSTEAIKECVSQLNISTIPPSIILCYFTENYNSKKILDYLKEQFPNSKIHGCTSCKGVMTDDGFSSHSS LGLWVLTDVKGSYGTGILELPSEFHDVSQLTKQVLNQAIADSTRYGELPSLILLHATPGYEEKIIETIDAFFGTPVPLIG GSAADDYAKGNWSIFTQQGETNQGISISVFYPTCKVSYSFHSGYANSGISGIATKTNGRTIYEIDNKPVIDVYKEWTEIP MQIGDTKNLLERVTQYPLGRVAGTMYSVPYFKLAHPVKFTHDGGMECFAKINEGEELFLMIGDTEQIISRPKRVIDSAIC MKNDKFEPVGGINIFCAGSMMHINTYMSDVCQSLNDAMHNTSYICPFTFGEQGRFTGGENAHGNLMVSAVLFHY
Specific function: Unknown
COG id: COG3287
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43518; Mature: 43518
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIITSVSQLNDSTEAIKECVSQLNISTIPPSIILCYFTENYNSKKILDYLKEQFPNSKI CCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCC HGCTSCKGVMTDDGFSSHSSLGLWVLTDVKGSYGTGILELPSEFHDVSQLTKQVLNQAIA CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHH DSTRYGELPSLILLHATPGYEEKIIETIDAFFGTPVPLIGGSAADDYAKGNWSIFTQQGE CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCC TNQGISISVFYPTCKVSYSFHSGYANSGISGIATKTNGRTIYEIDNKPVIDVYKEWTEIP CCCCEEEEEEECEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCC MQIGDTKNLLERVTQYPLGRVAGTMYSVPYFKLAHPVKFTHDGGMECFAKINEGEELFLM HHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCEEEECCCCCEEEEEECCCCEEEEE IGDTEQIISRPKRVIDSAICMKNDKFEPVGGINIFCAGSMMHINTYMSDVCQSLNDAMHN ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHC TSYICPFTFGEQGRFTGGENAHGNLMVSAVLFHY CCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHCC >Mature Secondary Structure MQIITSVSQLNDSTEAIKECVSQLNISTIPPSIILCYFTENYNSKKILDYLKEQFPNSKI CCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCC HGCTSCKGVMTDDGFSSHSSLGLWVLTDVKGSYGTGILELPSEFHDVSQLTKQVLNQAIA CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHH DSTRYGELPSLILLHATPGYEEKIIETIDAFFGTPVPLIGGSAADDYAKGNWSIFTQQGE CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCC TNQGISISVFYPTCKVSYSFHSGYANSGISGIATKTNGRTIYEIDNKPVIDVYKEWTEIP CCCCEEEEEEECEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCC MQIGDTKNLLERVTQYPLGRVAGTMYSVPYFKLAHPVKFTHDGGMECFAKINEGEELFLM HHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCEEEECCCCCEEEEEECCCCEEEEE IGDTEQIISRPKRVIDSAICMKNDKFEPVGGINIFCAGSMMHINTYMSDVCQSLNDAMHN ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHC TSYICPFTFGEQGRFTGGENAHGNLMVSAVLFHY CCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA