| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695042
Identifier: 209695042
GI number: 209695042
Start: 1637373
End: 1638545
Strand: Reverse
Name: 209695042
Synonym: VSAL_I1537
Alternate gene names: NA
Gene position: 1638545-1637373 (Counterclockwise)
Preceding gene: 209695043
Following gene: 209695039
Centisome position: 49.28
GC content: 40.24
Gene sequence:
>1173_bases ATGCCTTCACAATATAGAATCAAACGGATTGTTGAGATCGGAGACACCCTACACCGATGTGGGTGTGCTCCCTATAAAGT AGAACGTTATACCACTTTTTATGCAAATAAATATGGCATAGAGTGCATGATCCAAGCGACACCTACCTCTATAAACTATC AGTTTCCTGATGATGATAATGCGGTCATCATGAAACGACACAAGCCAGCAGGCATTGATTTAGGCTTGCTGGCAAATACC ATTATCCGCTTACAACAACCATTAAATGAAAGCTCGCCTCCTGCTGAAAGCATCTTCTTTCCTACATGGATGATTGCATT AGCAAACATTTGTATTCCACCTGCTTTTTTGATGCTCGTAGGCTCGACCTATGAAGCATTATGGGTCAGCTTTCTGCTTG GTTTTATTGTTTGGGGTTGTCAAACGATCTGCACTAAGCGTCGCAGTATTGCTGTTGAATTTTTTAGTGCTTTAGTCATA ACTCTCATCGTTACTTTTATCGCAAGTTTAGGTTTTCCGATCCCCATATTAGGGTTATGCATTGCTGCAATAGTTCTCTT TGTTCCCGGTTTATCTATCGCGAATGCCTTAGAATGCTTAGCATTTAACGACTTAGTCTCTGGCACCAGTTTACTTGGCC AATGCTTTCTTACTTTAATCAAACTTTTTATCGGTATTATCATTGGCTTTCACATTGGTGACGCTTTATGGACCATCCCT GAATCCGTAAAATATCAAAACGAATTTCCTCTATGGTTACAGATCGCAGGTTTACCTTTAATTTCTTTTTGCCTTGGCGT CATGTTTAAAGCTAGATTCCAAGATATGATCTACAGCTTACCTGTCGCCGTTTTAGGTATGTGGGGGCCTTTCTATTTAG GCTTTGATGGAGGATGGGTGGTCGGTACTTGGGTAACAACCGTATTGATCACACTTTATGGCACATGGATAGCTAAACGC TTAAATCTGACGGGTATTATCTTTATTATTCAAGGTATTATTATTCTTGTTCCAGGAAGTCGAGTCTTAGTAAGTGCAAG TCAAAGTGTGTTTCAAGAATCAATACTTCCGATTCCGAGTATTGGGTTATCCGCCCTCTTTATGTTCTCAGCCATTGTTG CAGGGCAAATCACCGCTTACTCTATTTACTCACCTAAAATAGACCAAGATTAA
Upstream 100 bases:
>100_bases TGGGTTGGTAACCGCATAAAGAATGGGCTTCCTCGTGAACTGGTTAGAGACGGTAACTTATTTTAATCAACGCTAGTTAA AAAGTAGTAGGGAAACGGAT
Downstream 100 bases:
>100_bases ATTTTATTGATTTGTAAAAATAGAAAAAGGCCAGTAACTCATCGAATTACTGGCCTTCATTTTATTTATATAATAGTAAA AATTAAGCGCGACTCATGAA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MPSQYRIKRIVEIGDTLHRCGCAPYKVERYTTFYANKYGIECMIQATPTSINYQFPDDDNAVIMKRHKPAGIDLGLLANT IIRLQQPLNESSPPAESIFFPTWMIALANICIPPAFLMLVGSTYEALWVSFLLGFIVWGCQTICTKRRSIAVEFFSALVI TLIVTFIASLGFPIPILGLCIAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGFHIGDALWTIP ESVKYQNEFPLWLQIAGLPLISFCLGVMFKARFQDMIYSLPVAVLGMWGPFYLGFDGGWVVGTWVTTVLITLYGTWIAKR LNLTGIIFIIQGIIILVPGSRVLVSASQSVFQESILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIDQD
Sequences:
>Translated_390_residues MPSQYRIKRIVEIGDTLHRCGCAPYKVERYTTFYANKYGIECMIQATPTSINYQFPDDDNAVIMKRHKPAGIDLGLLANT IIRLQQPLNESSPPAESIFFPTWMIALANICIPPAFLMLVGSTYEALWVSFLLGFIVWGCQTICTKRRSIAVEFFSALVI TLIVTFIASLGFPIPILGLCIAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGFHIGDALWTIP ESVKYQNEFPLWLQIAGLPLISFCLGVMFKARFQDMIYSLPVAVLGMWGPFYLGFDGGWVVGTWVTTVLITLYGTWIAKR LNLTGIIFIIQGIIILVPGSRVLVSASQSVFQESILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIDQD >Mature_389_residues PSQYRIKRIVEIGDTLHRCGCAPYKVERYTTFYANKYGIECMIQATPTSINYQFPDDDNAVIMKRHKPAGIDLGLLANTI IRLQQPLNESSPPAESIFFPTWMIALANICIPPAFLMLVGSTYEALWVSFLLGFIVWGCQTICTKRRSIAVEFFSALVIT LIVTFIASLGFPIPILGLCIAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGFHIGDALWTIPE SVKYQNEFPLWLQIAGLPLISFCLGVMFKARFQDMIYSLPVAVLGMWGPFYLGFDGGWVVGTWVTTVLITLYGTWIAKRL NLTGIIFIIQGIIILVPGSRVLVSASQSVFQESILPIPSIGLSALFMFSAIVAGQITAYSIYSPKIDQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42980; Mature: 42848
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSQYRIKRIVEIGDTLHRCGCAPYKVERYTTFYANKYGIECMIQATPTSINYQFPDDDN CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCC AVIMKRHKPAGIDLGLLANTIIRLQQPLNESSPPAESIFFPTWMIALANICIPPAFLMLV EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH GSTYEALWVSFLLGFIVWGCQTICTKRRSIAVEFFSALVITLIVTFIASLGFPIPILGLC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH IAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGFHIGDALWTIP HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ESVKYQNEFPLWLQIAGLPLISFCLGVMFKARFQDMIYSLPVAVLGMWGPFYLGFDGGWV HHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCH VGTWVTTVLITLYGTWIAKRLNLTGIIFIIQGIIILVPGSRVLVSASQSVFQESILPIPS HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHHCCCCCC IGLSALFMFSAIVAGQITAYSIYSPKIDQD HHHHHHHHHHHHHHCCCEEEEEECCCCCCC >Mature Secondary Structure PSQYRIKRIVEIGDTLHRCGCAPYKVERYTTFYANKYGIECMIQATPTSINYQFPDDDN CCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCC AVIMKRHKPAGIDLGLLANTIIRLQQPLNESSPPAESIFFPTWMIALANICIPPAFLMLV EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH GSTYEALWVSFLLGFIVWGCQTICTKRRSIAVEFFSALVITLIVTFIASLGFPIPILGLC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH IAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGFHIGDALWTIP HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ESVKYQNEFPLWLQIAGLPLISFCLGVMFKARFQDMIYSLPVAVLGMWGPFYLGFDGGWV HHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCH VGTWVTTVLITLYGTWIAKRLNLTGIIFIIQGIIILVPGSRVLVSASQSVFQESILPIPS HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCEEEHHHHHHHHHHCCCCCC IGLSALFMFSAIVAGQITAYSIYSPKIDQD HHHHHHHHHHHHHHCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA