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The map label for this gene is rbsC [H]

Identifier: 209694897

GI number: 209694897

Start: 1491115

End: 1492086

Strand: Reverse

Name: rbsC [H]

Synonym: VSAL_I1370

Alternate gene names: 209694897

Gene position: 1492086-1491115 (Counterclockwise)

Preceding gene: 209694898

Following gene: 209694896

Centisome position: 44.87

GC content: 43.62

Gene sequence:

>972_bases
ATGACTCCATCTGAATCGCAAAAAAAGAAAGGCGGCATGTTCTCAAAAGAATGGCTGATTGAGCAAAAATCGTTAATCGC
ACTATTGCTACTCATTGTCGTGGTTTCTTTTTTAAACGACAACTTTTTTACTGTCGACAATATTCTAAATATCTTACGTC
AAACCTCGGTAAACGCGATCATCGCAGTTGGTATGACATTAGTTATTTTGACCGCTGGCATTGATTTGAGTGTTGGCTCA
GTATTGGCGCTTTGTGGTGCCTTTGCCGCTACGATGATTGGCCTTGAGATCCACCCAATCATTGCGGTTCCGACCTCTTT
ACTTGCAGGTGCTATTCTTGGTGCGATTAGCGGAATTATCATTGCCAAAGGTAAAGTTCAAGCCTTTATCGCAACGCTGG
TAACGATGACGTTGCTTCGTGGTGTAACCATGGTTTACACAGAAGGCCGCCCTATCTCTACTGGCTTTACTGATGTTGCT
GATAGCTTTTCATGGTTCGGTACGGGTTATGCACTTGGTATCCCAGTTCCAATCTGGTTAATGGTTATCGTGTTCGCATC
GGTATGGTACTTATTAAATCACACACGCTTTGGTCGCTATGTTTACGCGCTAGGTGGCAATGAATCGGCAACACGTTTAT
CGGGCATCAATGTTGATCGCGTTAAGATCGGTGTTTATGCTATCTGTGGTCTACTTGCTGCTTTGGCTGGCTTAATCGTA
ACGTCTCGTCTTTCTTCTGCTCAACCAACCGCGGGTATGGGTTATGAGTTAGATGCTATCGCTGCGGTTGTTCTTGGTGG
AACAAGCCTTGCTGGTGGTAAAGGTCGTATTATGGGTACGCTTGTTGGTGCTTTGATTATCGGCTTCTTGAACAACGCAC
TTAACTTATTAGATGTATCGTCTTACTACCAAATGATCGCAAAAGCCGTGGTTATCTTACTGGCCGTATTAGTCGATAAT
AAAAACAAATAA

Upstream 100 bases:

>100_bases
AATTCATGGCTAAAGATGCCGATCAAGAAAAATTATTGGCTTGTGCAGTAGGTAAAACTGTTCAGCAAAACGTCGAGGTA
ACAGCATGAGCACTAAATCT

Downstream 100 bases:

>100_bases
ATCCAAAAGAACCACCCTGTAACTCGTTAGCTGTACTAAAAATTAGCTCTATCAATATTATTATTTTTATAAAAAGGCAC
AACCAAACGTACCCTGTTTG

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MTPSESQKKKGGMFSKEWLIEQKSLIALLLLIVVVSFLNDNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDLSVGS
VLALCGAFAATMIGLEIHPIIAVPTSLLAGAILGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTEGRPISTGFTDVA
DSFSWFGTGYALGIPVPIWLMVIVFASVWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGLIV
TSRLSSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDN
KNK

Sequences:

>Translated_323_residues
MTPSESQKKKGGMFSKEWLIEQKSLIALLLLIVVVSFLNDNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDLSVGS
VLALCGAFAATMIGLEIHPIIAVPTSLLAGAILGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTEGRPISTGFTDVA
DSFSWFGTGYALGIPVPIWLMVIVFASVWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGLIV
TSRLSSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDN
KNK
>Mature_322_residues
TPSESQKKKGGMFSKEWLIEQKSLIALLLLIVVVSFLNDNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDLSVGSV
LALCGAFAATMIGLEIHPIIAVPTSLLAGAILGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTEGRPISTGFTDVAD
SFSWFGTGYALGIPVPIWLMVIVFASVWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGLIVT
SRLSSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDNK
NK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=72.258064516129, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI1790524, Length=321, Percent_Identity=39.5638629283489, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI145693152, Length=324, Percent_Identity=37.6543209876543, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=37.2549019607843, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789992, Length=356, Percent_Identity=35.9550561797753, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=39.3939393939394, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788471, Length=321, Percent_Identity=35.8255451713396, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693214, Length=247, Percent_Identity=38.8663967611336, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=30.7958477508651, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1787794, Length=286, Percent_Identity=31.1188811188811, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33958; Mature: 33827

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSESQKKKGGMFSKEWLIEQKSLIALLLLIVVVSFLNDNFFTVDNILNILRQTSVNAI
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
IAVGMTLVILTAGIDLSVGSVLALCGAFAATMIGLEIHPIIAVPTSLLAGAILGAISGII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHH
IAKGKVQAFIATLVTMTLLRGVTMVYTEGRPISTGFTDVADSFSWFGTGYALGIPVPIWL
EECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCHHHHCCCEEECCCHHHHH
MVIVFASVWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGLIV
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TSRLSSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNALNLLDVS
HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKAVVILLAVLVDNKNK
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPSESQKKKGGMFSKEWLIEQKSLIALLLLIVVVSFLNDNFFTVDNILNILRQTSVNAI
CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH
IAVGMTLVILTAGIDLSVGSVLALCGAFAATMIGLEIHPIIAVPTSLLAGAILGAISGII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHH
IAKGKVQAFIATLVTMTLLRGVTMVYTEGRPISTGFTDVADSFSWFGTGYALGIPVPIWL
EECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCHHHHCCCEEECCCHHHHH
MVIVFASVWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGLIV
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TSRLSSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNALNLLDVS
HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKAVVILLAVLVDNKNK
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]