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The map label for this gene is rbsB [H]

Identifier: 209694896

GI number: 209694896

Start: 1490100

End: 1490978

Strand: Reverse

Name: rbsB [H]

Synonym: VSAL_I1369

Alternate gene names: 209694896

Gene position: 1490978-1490100 (Counterclockwise)

Preceding gene: 209694897

Following gene: 209694895

Centisome position: 44.84

GC content: 45.16

Gene sequence:

>879_bases
ATGAAAAAGTTAGCAACCTTAATCTCTGCGGCACTACTTTCTGCCTCTTTCTCATCGACGGCTTCGGCTCAAGATACAAT
GGCAATGGTCGTCTCTACCTTGAACAACCCATTCTTTGTAACAATGAAAGAAGGCGCTGAAGCAAAAGCAAAAGAACTAG
GCTACAAACTGATTGTTCTGGATTCTCAAAATGATCCAAGTAAAGAGCTTTCAAACGTTGAAGATCTAACGGTTCGTGGT
GTTAAAGCCATTTTGATTAACCCAACCGATTCAGATGCGGTATCAAATGCAATTCGCATGGCTAACCGTTCTGGAATTCC
TGTCCTAACGCTTGATCGTGGTGCAAGCCGTGGTGATGTAGTGAGCCATATTGCGTCTGATAACGTGGCTGGTGGTGAAA
TGGCGGGTAAATACATCATGGAAAAAGTGGGCCAAAAAGCGCGCGTTATCCAACTGGAAGGTATTGCAGGTACGTCTGCT
GCGCGTGAACGTGGCGAAGGTTTCATGAAAACAGTAAACAGCGGTGATTTAGTGCTACTTGGTAGCCAACCGGCTGATTT
CGACCGCACTAAAGGTCTAAACGTAATGGAAAACATGCTTGCTGCAAACCCTGATGTGCAAGCGGTATTTGCTCAAAATG
ATGAAATGGCATTGGGTGCACTTCGCGCTGTGCAAGCGTCAGGTAAAGACGTATTAATCGTCGGCTTTGATGGCACTGAA
GATGGTATTGCAGCCGTTAACCGTGGCATCTTGGGCGCAACTATCGCTCAACAACCCGATTTAATCGGTGCACTGGGTGT
TGAAACGGCGGATAAAGTACTTAAAGGCGAAACGGTTGCTAAATATATCCCTGTTGAACTAAAAGTTATCACTAAATAA

Upstream 100 bases:

>100_bases
TAAAAATTAGCTCTATCAATATTATTATTTTTATAAAAAGGCACAACCAAACGTACCCTGTTTGAATTGTGCCACCCTAC
ACCCTTATAAGGAATATAGA

Downstream 100 bases:

>100_bases
GACCGTAACAACATAATACAACTGGAGCATTGATGCGCTCACAACGTAGTATCAGTGCTCCACTCTCTCTTCAATCTCAT
AGAAAATGTATCGCTAAATG

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKLATLISAALLSASFSSTASAQDTMAMVVSTLNNPFFVTMKEGAEAKAKELGYKLIVLDSQNDPSKELSNVEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGDVVSHIASDNVAGGEMAGKYIMEKVGQKARVIQLEGIAGTSA
ARERGEGFMKTVNSGDLVLLGSQPADFDRTKGLNVMENMLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGILGATIAQQPDLIGALGVETADKVLKGETVAKYIPVELKVITK

Sequences:

>Translated_292_residues
MKKLATLISAALLSASFSSTASAQDTMAMVVSTLNNPFFVTMKEGAEAKAKELGYKLIVLDSQNDPSKELSNVEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGDVVSHIASDNVAGGEMAGKYIMEKVGQKARVIQLEGIAGTSA
ARERGEGFMKTVNSGDLVLLGSQPADFDRTKGLNVMENMLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGILGATIAQQPDLIGALGVETADKVLKGETVAKYIPVELKVITK
>Mature_292_residues
MKKLATLISAALLSASFSSTASAQDTMAMVVSTLNNPFFVTMKEGAEAKAKELGYKLIVLDSQNDPSKELSNVEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGDVVSHIASDNVAGGEMAGKYIMEKVGQKARVIQLEGIAGTSA
ARERGEGFMKTVNSGDLVLLGSQPADFDRTKGLNVMENMLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGILGATIAQQPDLIGALGVETADKVLKGETVAKYIPVELKVITK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=293, Percent_Identity=68.9419795221843, Blast_Score=409, Evalue=1e-116,
Organism=Escherichia coli, GI1790526, Length=302, Percent_Identity=34.7682119205298, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=29.5652173913043, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790194, Length=275, Percent_Identity=26.1818181818182, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789990, Length=230, Percent_Identity=30.8695652173913, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788473, Length=279, Percent_Identity=27.2401433691756, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787948, Length=307, Percent_Identity=24.4299674267101, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788898, Length=249, Percent_Identity=23.6947791164659, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30535; Mature: 30535

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLATLISAALLSASFSSTASAQDTMAMVVSTLNNPFFVTMKEGAEAKAKELGYKLIVL
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEEEE
DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGDV
ECCCCCHHHHCCCHHHEECCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHH
VSHIASDNVAGGEMAGKYIMEKVGQKARVIQLEGIAGTSAARERGEGFMKTVNSGDLVLL
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCHHHEECCCCCEEEE
GSQPADFDRTKGLNVMENMLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCC
DGIAAVNRGILGATIAQQPDLIGALGVETADKVLKGETVAKYIPVELKVITK
CHHHHHHCCCCCCHHHCCCCCEEECCCHHHHHHHCCCHHHEECCEEEEEECC
>Mature Secondary Structure
MKKLATLISAALLSASFSSTASAQDTMAMVVSTLNNPFFVTMKEGAEAKAKELGYKLIVL
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEEEE
DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGDV
ECCCCCHHHHCCCHHHEECCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHH
VSHIASDNVAGGEMAGKYIMEKVGQKARVIQLEGIAGTSAARERGEGFMKTVNSGDLVLL
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCHHHEECCCCCEEEE
GSQPADFDRTKGLNVMENMLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCC
DGIAAVNRGILGATIAQQPDLIGALGVETADKVLKGETVAKYIPVELKVITK
CHHHHHHCCCCCCHHHCCCCCEEECCCHHHHHHHCCCHHHEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]