| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694891
Identifier: 209694891
GI number: 209694891
Start: 1482981
End: 1485653
Strand: Reverse
Name: 209694891
Synonym: VSAL_I1364
Alternate gene names: NA
Gene position: 1485653-1482981 (Counterclockwise)
Preceding gene: 209694892
Following gene: 209694890
Centisome position: 44.68
GC content: 41.23
Gene sequence:
>2673_bases ATGGAAAGCAGTGAAATGAAAACAACCCAATTAAAAACAACACTTGCAGCAGCTGTTGGCTTAGCACTCTCAGGCAGCGC TTACGCGGATGTGATTATATCTCAATACGTAGAAGGTGGAAGTTACAATAAATCGTTAGAAATCAGTAATACAGGAGACA GTTCAGTTTCTCTCGCGGGGTATGTTCTTAAATCAAAATACAATGGTTTAAACGAATGGCAAAAGGATCTTGATCTTTCT GCCATTACGCTTGATGCAAAGAGCGTTTATGTCATCTCAAACAGTCGAGCCTCTGATGCGATCAAAGCCGTAACCAATAA TATTGAAAGCATCGTAAATCATAACGGCGATGACACTTACATGCTGTTTAAAGATGGGATAGAACACGACCGTATTGGGG TCGATGGCGACGTAGATTGGGGCAAAGATAAGAGCTTTGTCCGCTCAACATTAAGTCCAAGTACAACATTTGATCCAACG ATGTGGCTTGAGTTACCAAAAGACAATATTGATGGCCTTGGTACTTACCAAGAAGGCATTACTCCTCCTCTCCCTTTTGC TTGTGAAACCGATTCAGGCACGACCCCTACTTTTACAGAGATTAATGAGATTCAAGGTACGGGAAATAAATCGCCGTTAA TCACGAGTGGCTTTATTTCAGACGACGAGTATTTTGTTCAAGGCATTGTGACTGCTCGGGGCGACAGCTTGTTAAAAGGC TTTTACCTGCAAGGCCTAAATAATGACAATGATCCAAACAGCTCTGAAGGTATTTTCGTCAGTACTGGCAGCGCCCCTTC CCAAGAGATCCAACCAGGGGCATTAGTCTGTGTTAAAGCAAAAGTTCAAGAATATTATAGCCAAACACAATTAAAACCAG ACACCAATAACGTCGTTGTTCAAGGTTCACAATCTCCTGTTGATGTCACTGAACTGGTCATCAATGAGAATGAAACATTA GCAGATGCATTAGAGCGTCACGAAGGCATGCACGTTAAATTAACCTCTCATTCCGATTTACGAATTACGCGTAATTTCAG TTTTGATTACGACAGTAAACGCAACAATATGGTGTTGTCTCATGGTGCACCACTGTATAAACCAACTCAGTTATTTGCAG CAGAAAGTACAGAGGCCATTCAGCTAGCAAAAGAGAATGCTAAGCGTCAAATCACCATAGAATCAGACAACAAAGCCGCA AACGGAAAAGTGCCTTACTTCCCAGAGTTTGCCTCTGATATCGACCAAGATGGCAGTGCCGATTCTTACCTTCGTCTTGG TGCTAGAATTGAAGGACTAGAAGGAGTGGTTGCTTATTCTTACGGTCAATATCGCTTGGTTGCAAGTAATACCATCACAC AAGAAAACATCATTACTAAAGCCTTAAATACCGATGGTTCTACGCTCTTCAATGTAGAACGTACTGACAAACCAAGTATT GATGATGAAGATTTAACTATTACCAGTTTTAACGTTTTAAACTACTTCACCTCTGTTTCTATAAACGGTGATGCAAACCC AACAGGTCAAAACCGTGGCGCAACAACAGCTGATGAGTTTGCAATTCAACAAGCAAAAATTCTATCGGCCTTAACCGCCA TTGATGCTGACATTATTGGTTTGATGGAAATTGAAAATAATGGCTTTGGTGAAAACAGTGCCATTCATGATCTCACTGCC GTGTTAAATGCACAATTTGAAGACAAAGAAGATCACTATAAATACGTTGAGATAGACGCTGCGGATAAATACCAAGGTGA GTATTTAGGCTCTGACGCCATTATGGTCGCCCTGTTGTATCGTCCTGACAAAGTAAGATTAGAAGGTGATGCACGCGTAA TAAAAACACCGGAGCAACACGTCACGGCAAACACCGTCACTCGAGATAACAACGGCACTATTGAATCAAACCCTGCGTAT GATAAATATCAACGCCACAGCTTGGTTCAAGAGTTTATTGTAAAAGAAGCCAAAGAGCCGCTAACCGTTGTCGTTAATCA CTTAAAATCAAAAGGATCAGAGTGTATTGAACAATGGCAGAACTTCAATGAAGACTCAGAAGCGCCTGACTTACAAGGCA ATTGTAATCGCTTTAGAGTCTCAGCAGTAAAAGCCATTGGTGATGAATTAAGTACAGTTGAAGGCGATATTCTGATCTTA GGTGACATGAATGCGTATGGTATGGAAGACCCATTACTTACGCTGACAGATTACAGCCCTGATAAATACGATCGCGACAT CTTTACGGCGTCTTATACCACTCTTGGAAACGATACCGCCGGTAACCCTATCCCTTATGAAGAAACAGGCAGCCAAATCA AAAAAGGGTACGGATACCTTAATCTAAATACCTTGTTGCACAGCACAGAAACCTTCTCTTATACCTACTCAGGGGAATTA GGTAATCTTGATCACGCACTCGCTAATGAATCTCTTGCAAAACGAGTCACTCAAATTGAAGATTGGCACATTAATGCCAC AGAAAGTAACTTGTTTGAATACAGCTCAAAGTACACTGGCGACATGGCAAAATACAACGATATGTATTCGGCTTCTGACC ACGATCCTGTTGTTATTTCTCTTGAATATGCAGGCTCACTCAACCTACTTGCTTTATCTTCACTCTTTGGTTTTGGCTAT CTGCGTCGAAAACTAAACAAAGACAATAAATAA
Upstream 100 bases:
>100_bases TCTCACTATTCATGTAAAAGAAATGAATGTGACATATCAATATGAGAAGTTTAATCGATAGAAAAAACAAATAACAGTGA ATCATTCATATAACGTGACT
Downstream 100 bases:
>100_bases GGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTTCATTTAACGAGAACGTAA TTATGCAAAAAGATAAAAAG
Product: nuclease
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; Endonuclease I; Extracellular Ribonuclease/Nuclease Fusion Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Extracellular Nuclease/Phosphatase; 50S Ribosomal Type B; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY LRRKLNKDNK
Sequences:
>Translated_890_residues MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY LRRKLNKDNK >Mature_890_residues MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY LRRKLNKDNK
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97794; Mature: 97794
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAG CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEHHH YVLKSKYNGLNEWQKDLDLSAITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTY HHHHHHCCCHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEE MLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPTMWLELPKDNIDGLGTYQEGI EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCC TPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG CCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHH FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVV HHEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE QGSQSPVDVTELVINENETLADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLS ECCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE HGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAANGKVPYFPEFASDIDQDGSA CCCCCCCCHHHEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCC DSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI CHHEEECCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCC DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIG CCCCEEEEEEHHEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE LMEIENNGFGENSAIHDLTAVLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLY EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE RPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAYDKYQRHSLVQEFIVKEAKEP CCCEEEECCCCEEEECCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC LTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEE GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYL ECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE NLNTLLHSTETFSYTYSGELGNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTG EEHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHCCC DMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGYLRRKLNKDNK CHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAG CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEHHH YVLKSKYNGLNEWQKDLDLSAITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTY HHHHHHCCCHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEE MLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPTMWLELPKDNIDGLGTYQEGI EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCC TPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG CCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHH FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVV HHEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE QGSQSPVDVTELVINENETLADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLS ECCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE HGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAANGKVPYFPEFASDIDQDGSA CCCCCCCCHHHEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCC DSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI CHHEEECCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCC DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIG CCCCEEEEEEHHEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE LMEIENNGFGENSAIHDLTAVLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLY EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE RPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAYDKYQRHSLVQEFIVKEAKEP CCCEEEECCCCEEEECCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC LTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEE GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYL ECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE NLNTLLHSTETFSYTYSGELGNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTG EEHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHCCC DMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGYLRRKLNKDNK CHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA