Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694862

Identifier: 209694862

GI number: 209694862

Start: 1443279

End: 1444295

Strand: Reverse

Name: 209694862

Synonym: VSAL_I1331

Alternate gene names: NA

Gene position: 1444295-1443279 (Counterclockwise)

Preceding gene: 209694866

Following gene: 209694860

Centisome position: 43.44

GC content: 40.31

Gene sequence:

>1017_bases
TTGTTAACGATTGAGAGCATCACTTTTACGACAATCAATATGTTCAACTTTGTTGAGCCGCCCAATGCGTATTACGATTT
TGAAAACATCCTGACCCAAGAGGAATGGCAAAAGAAACAAGACTGGTTTAAAAATAGAATAACCACGTTAAACTCTGATG
TGATTGGTTTTCAAGAAGTGTTTAGCCCTGAAGCCCTTGAAGCATTAGTTAACTCATTAGGCTATCCGTATTTTTGTACG
GTAGATGAACCAAAATCAGAAGATGGGTATGTATTTCATTCTCCCGTTGTGGCGTTTGCGTCACGCTACCCGATTGTGAG
TTCTCAGCCTGTTATTGCAAAATCAGAACAACTGGCTCGATTCGGAATTGAGTTTGAATTTAATAGAGTGCCTGTTCACG
CCAGTATCGATCTACCACACCTTGGGGTCACTGATTGTTATGTGGTGCACTTTAAGTCTCAACGACCAAAAGATCCGATA
GAGATAGATGGTATTGAAGAACCAGAATCTACCCCGCTTACTCAACTGCATGATGAGCAATTAGGTTCATGGCTTTCGTC
TGCTCAACGTGGATTGGAAGCCAATACCCTTCATCAGTACATTACGACTCAAAGAAAGAAATCGTCTCAACCCGTTGTGT
TAATGGGCGATTTTAATAAACCTTTATTTCATAATGAATTTATCGGCTTACTCTCTCATCAACTAAGATACGATAAATTT
AGCACTGATTATCTCACCACCTTTCAGTTAAAAGACAGCTGGGATATATACAGCCAATTAAAGGGAACGGATTTATTAGA
AGAACGCGTCAGTACTCATTATTATGGCGCGAAAGGCTCAGTATTGGACTACATTCTATTATCGAATGAGTTTGATAGCT
CTTACTCTGGCAGTTTGTTAGAAGTCACTGAGTATCGTGTTGTCGACCTGCATATCGTGAACCCTAGATTCGACATCGAC
CAATTCAGTACCGATCATGCTTTGGTTTCTATTACAGCCCGTATTCGACAGGCATAA

Upstream 100 bases:

>100_bases
TAATATTCAATAGACAAACATAACGAACTCATTTGCGTATACTTATAGATATTATCTTCAGTATTCATCCTGATTAAACA
CTTTCTATGAGAACTTAAAT

Downstream 100 bases:

>100_bases
AAAAAGCGTCTAATAATAGACGCCTTCTAATTACTGGCTTAAAACCACATTCGATTACTGACCGCGGTAAGTACAACCCG
CCGTACAGGTTTCTTTAATC

Product: hypothetical protein

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease/Exonuclease/Phosphatase Family

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT
VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI
EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF
STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID
QFSTDHALVSITARIRQA

Sequences:

>Translated_338_residues
MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT
VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI
EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF
STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID
QFSTDHALVSITARIRQA
>Mature_338_residues
MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT
VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI
EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF
STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID
QFSTDHALVSITARIRQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38840; Mature: 38840

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEV
CEEEEEEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FSPEALEALVNSLGYPYFCTVDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLAR
CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHH
FGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPIEIDGIEEPESTPLTQLHDEQ
HCCEEEECEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHH
LGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLL
CCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCEE
EVTEYRVVDLHIVNPRFDIDQFSTDHALVSITARIRQA
EEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCC
>Mature Secondary Structure
MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEV
CEEEEEEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FSPEALEALVNSLGYPYFCTVDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLAR
CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHH
FGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPIEIDGIEEPESTPLTQLHDEQ
HCCEEEECEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHH
LGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLL
CCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCEE
EVTEYRVVDLHIVNPRFDIDQFSTDHALVSITARIRQA
EEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA