| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694862
Identifier: 209694862
GI number: 209694862
Start: 1443279
End: 1444295
Strand: Reverse
Name: 209694862
Synonym: VSAL_I1331
Alternate gene names: NA
Gene position: 1444295-1443279 (Counterclockwise)
Preceding gene: 209694866
Following gene: 209694860
Centisome position: 43.44
GC content: 40.31
Gene sequence:
>1017_bases TTGTTAACGATTGAGAGCATCACTTTTACGACAATCAATATGTTCAACTTTGTTGAGCCGCCCAATGCGTATTACGATTT TGAAAACATCCTGACCCAAGAGGAATGGCAAAAGAAACAAGACTGGTTTAAAAATAGAATAACCACGTTAAACTCTGATG TGATTGGTTTTCAAGAAGTGTTTAGCCCTGAAGCCCTTGAAGCATTAGTTAACTCATTAGGCTATCCGTATTTTTGTACG GTAGATGAACCAAAATCAGAAGATGGGTATGTATTTCATTCTCCCGTTGTGGCGTTTGCGTCACGCTACCCGATTGTGAG TTCTCAGCCTGTTATTGCAAAATCAGAACAACTGGCTCGATTCGGAATTGAGTTTGAATTTAATAGAGTGCCTGTTCACG CCAGTATCGATCTACCACACCTTGGGGTCACTGATTGTTATGTGGTGCACTTTAAGTCTCAACGACCAAAAGATCCGATA GAGATAGATGGTATTGAAGAACCAGAATCTACCCCGCTTACTCAACTGCATGATGAGCAATTAGGTTCATGGCTTTCGTC TGCTCAACGTGGATTGGAAGCCAATACCCTTCATCAGTACATTACGACTCAAAGAAAGAAATCGTCTCAACCCGTTGTGT TAATGGGCGATTTTAATAAACCTTTATTTCATAATGAATTTATCGGCTTACTCTCTCATCAACTAAGATACGATAAATTT AGCACTGATTATCTCACCACCTTTCAGTTAAAAGACAGCTGGGATATATACAGCCAATTAAAGGGAACGGATTTATTAGA AGAACGCGTCAGTACTCATTATTATGGCGCGAAAGGCTCAGTATTGGACTACATTCTATTATCGAATGAGTTTGATAGCT CTTACTCTGGCAGTTTGTTAGAAGTCACTGAGTATCGTGTTGTCGACCTGCATATCGTGAACCCTAGATTCGACATCGAC CAATTCAGTACCGATCATGCTTTGGTTTCTATTACAGCCCGTATTCGACAGGCATAA
Upstream 100 bases:
>100_bases TAATATTCAATAGACAAACATAACGAACTCATTTGCGTATACTTATAGATATTATCTTCAGTATTCATCCTGATTAAACA CTTTCTATGAGAACTTAAAT
Downstream 100 bases:
>100_bases AAAAAGCGTCTAATAATAGACGCCTTCTAATTACTGGCTTAAAACCACATTCGATTACTGACCGCGGTAAGTACAACCCG CCGTACAGGTTTCTTTAATC
Product: hypothetical protein
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease/Exonuclease/Phosphatase Family
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID QFSTDHALVSITARIRQA
Sequences:
>Translated_338_residues MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID QFSTDHALVSITARIRQA >Mature_338_residues MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEVFSPEALEALVNSLGYPYFCT VDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLARFGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPI EIDGIEEPESTPLTQLHDEQLGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLLEVTEYRVVDLHIVNPRFDID QFSTDHALVSITARIRQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38840; Mature: 38840
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEV CEEEEEEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHH FSPEALEALVNSLGYPYFCTVDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLAR CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHH FGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPIEIDGIEEPESTPLTQLHDEQ HCCEEEECEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHH LGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLL CCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCEE EVTEYRVVDLHIVNPRFDIDQFSTDHALVSITARIRQA EEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCC >Mature Secondary Structure MLTIESITFTTINMFNFVEPPNAYYDFENILTQEEWQKKQDWFKNRITTLNSDVIGFQEV CEEEEEEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHH FSPEALEALVNSLGYPYFCTVDEPKSEDGYVFHSPVVAFASRYPIVSSQPVIAKSEQLAR CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHH FGIEFEFNRVPVHASIDLPHLGVTDCYVVHFKSQRPKDPIEIDGIEEPESTPLTQLHDEQ HCCEEEECEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHH LGSWLSSAQRGLEANTLHQYITTQRKKSSQPVVLMGDFNKPLFHNEFIGLLSHQLRYDKF HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC STDYLTTFQLKDSWDIYSQLKGTDLLEERVSTHYYGAKGSVLDYILLSNEFDSSYSGSLL CCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCCCCCEE EVTEYRVVDLHIVNPRFDIDQFSTDHALVSITARIRQA EEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA