| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694855
Identifier: 209694855
GI number: 209694855
Start: 1434877
End: 1435389
Strand: Reverse
Name: 209694855
Synonym: VSAL_I1324
Alternate gene names: NA
Gene position: 1435389-1434877 (Counterclockwise)
Preceding gene: 209694856
Following gene: 209694852
Centisome position: 43.17
GC content: 38.01
Gene sequence:
>513_bases ATGAAGCCTTATTTTCTTACCACTTTACTTTTTCTTTTCCTATCATCTTTTAAAAGTAACGCTGAATCCCTTTCTCTTTA CTCTATGAATACAGGTTCATTCCTTTATCACCTCGTTCCTTACGATCCTGATTCACATCAATACTTTGGTAATCAATACT TTTCTGTCGAACGTAAGTTTTCTGAAGATTCAGATTACAGCTTTATGGTGGGCACCTTTCTAAATAGCCAAGCCAATCGC TGTATGCTAATCGGCGTCAGAAAAGACTGGTATCGTGTTAACGACAAATTAGTCATCAAAGGAATGTATTCATACGCTGG AGAGTTCTTCGTTGATGCTTTTGAAAATTGTGGTGACGGAGGGATCTATGAAACCGCAAAAGAAAAAGTAGGGATAGCTT TCGCCCCTTATATTTACCATGCTGCACAATACAATCTAACCGATTATTTTGGTGTTGAAGCTGGTTTTATTCTGCCGGGT ATCATTGTGATGAGTATGCAGTGGAGTTTCTAA
Upstream 100 bases:
>100_bases ATAAATATCAATATAAAGAGAGAGCTCGTTATGCTCTCTCTTTATATTCAGACATAAAGCATTTATAATGTGACTACATT TTTTTTACATCTTTTGAGCT
Downstream 100 bases:
>100_bases TGTAGAAACGAAACTAAAATAACGCACATAAAAAAACCACGATTCAGTAAATGACATCGTGGTTTTTTATTATGGTGAGA AGAAAAAACGCTTATTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MKPYFLTTLLFLFLSSFKSNAESLSLYSMNTGSFLYHLVPYDPDSHQYFGNQYFSVERKFSEDSDYSFMVGTFLNSQANR CMLIGVRKDWYRVNDKLVIKGMYSYAGEFFVDAFENCGDGGIYETAKEKVGIAFAPYIYHAAQYNLTDYFGVEAGFILPG IIVMSMQWSF
Sequences:
>Translated_170_residues MKPYFLTTLLFLFLSSFKSNAESLSLYSMNTGSFLYHLVPYDPDSHQYFGNQYFSVERKFSEDSDYSFMVGTFLNSQANR CMLIGVRKDWYRVNDKLVIKGMYSYAGEFFVDAFENCGDGGIYETAKEKVGIAFAPYIYHAAQYNLTDYFGVEAGFILPG IIVMSMQWSF >Mature_170_residues MKPYFLTTLLFLFLSSFKSNAESLSLYSMNTGSFLYHLVPYDPDSHQYFGNQYFSVERKFSEDSDYSFMVGTFLNSQANR CMLIGVRKDWYRVNDKLVIKGMYSYAGEFFVDAFENCGDGGIYETAKEKVGIAFAPYIYHAAQYNLTDYFGVEAGFILPG IIVMSMQWSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19567; Mature: 19567
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPYFLTTLLFLFLSSFKSNAESLSLYSMNTGSFLYHLVPYDPDSHQYFGNQYFSVERKF CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECC SEDSDYSFMVGTFLNSQANRCMLIGVRKDWYRVNDKLVIKGMYSYAGEFFVDAFENCGDG CCCCCCEEEEEEHHCCCCCEEEEEEECCCEEECCCEEEEEEHHHHHHHHHHHHHHCCCCC GIYETAKEKVGIAFAPYIYHAAQYNLTDYFGVEAGFILPGIIVMSMQWSF CCCHHHHHHCCEEEHHHHHHHHHCCCCHHCCCCCCHHHHHHEEEEEECCC >Mature Secondary Structure MKPYFLTTLLFLFLSSFKSNAESLSLYSMNTGSFLYHLVPYDPDSHQYFGNQYFSVERKF CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECC SEDSDYSFMVGTFLNSQANRCMLIGVRKDWYRVNDKLVIKGMYSYAGEFFVDAFENCGDG CCCCCCEEEEEEHHCCCCCEEEEEEECCCEEECCCEEEEEEHHHHHHHHHHHHHHCCCCC GIYETAKEKVGIAFAPYIYHAAQYNLTDYFGVEAGFILPGIIVMSMQWSF CCCHHHHHHCCEEEHHHHHHHHHCCCCHHCCCCCCHHHHHHEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA