| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694823
Identifier: 209694823
GI number: 209694823
Start: 1397881
End: 1398354
Strand: Direct
Name: 209694823
Synonym: VSAL_I1288
Alternate gene names: NA
Gene position: 1397881-1398354 (Clockwise)
Preceding gene: 209694820
Following gene: 209694824
Centisome position: 42.04
GC content: 43.25
Gene sequence:
>474_bases ATGAAAACAGTTGCGATCCTCGTTGATGTGCAAAACATCTACTACACTACGCGTGACGTATACCAACGTCATTTTGACTA CAATGCATTATGGGCGAAAGTGACTGATGGCCGTAAGGTTGTCGGTGCAAACGCGTATGCCATTGCTCGTAGTGATGATA AGCAAAAGCAGTTTCATAATATTCTTCGTGGCATTGGGTTTGATGTAAAGTTAAAACCGTTTATTCAACGCCGTGACGGT TCAGCGAAAGGCGATTGGGATGTAGGCATTGCGTTAGATGCCATCGAGCTTGCTGAGCAGGCGGATATCGTGGTTATTCT GTCGGGCGATGGTGATTTTGAATTACTCGTTCAGCGAATTCAGTCACGTTTTAACAAAGAAGTTGAAGTGTATGGCGTTG CAGATTTAACCGCAAATGCATTAATTGATGCCGCTGACCGCTTTATTCCAATCGAAGGTAATCTATTGTTATAA
Upstream 100 bases:
>100_bases GTCATTATTACTGTCTTTCCAATACAAAATTTGGGCGAAGTATACCTAAATTAAAGGGATTCATATAGACTCATTAGATA ATTTCCTAGGAAGGTGAAAT
Downstream 100 bases:
>100_bases AAGAGATTTAGGGATATTTTATGGGGTTCGCCGTCGTATTTTTTCTCTGAATTTGTTTTCTACGCCTTACTGCTCCTACT GTATTTTATAGAGTAAGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MKTVAILVDVQNIYYTTRDVYQRHFDYNALWAKVTDGRKVVGANAYAIARSDDKQKQFHNILRGIGFDVKLKPFIQRRDG SAKGDWDVGIALDAIELAEQADIVVILSGDGDFELLVQRIQSRFNKEVEVYGVADLTANALIDAADRFIPIEGNLLL
Sequences:
>Translated_157_residues MKTVAILVDVQNIYYTTRDVYQRHFDYNALWAKVTDGRKVVGANAYAIARSDDKQKQFHNILRGIGFDVKLKPFIQRRDG SAKGDWDVGIALDAIELAEQADIVVILSGDGDFELLVQRIQSRFNKEVEVYGVADLTANALIDAADRFIPIEGNLLL >Mature_157_residues MKTVAILVDVQNIYYTTRDVYQRHFDYNALWAKVTDGRKVVGANAYAIARSDDKQKQFHNILRGIGFDVKLKPFIQRRDG SAKGDWDVGIALDAIELAEQADIVVILSGDGDFELLVQRIQSRFNKEVEVYGVADLTANALIDAADRFIPIEGNLLL
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17615; Mature: 17615
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVAILVDVQNIYYTTRDVYQRHFDYNALWAKVTDGRKVVGANAYAIARSDDKQKQFHN CCEEEEEEEECHHEEHHHHHHHHHCCCCEEEEEECCCCEEECCCEEEEECCCCHHHHHHH ILRGIGFDVKLKPFIQRRDGSAKGDWDVGIALDAIELAEQADIVVILSGDGDFELLVQRI HHHHCCCCEEECHHEEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHH QSRFNKEVEVYGVADLTANALIDAADRFIPIEGNLLL HHHCCCCEEEEEEECHHHHHHHHHHHCEEECCCCEEC >Mature Secondary Structure MKTVAILVDVQNIYYTTRDVYQRHFDYNALWAKVTDGRKVVGANAYAIARSDDKQKQFHN CCEEEEEEEECHHEEHHHHHHHHHCCCCEEEEEECCCCEEECCCEEEEECCCCHHHHHHH ILRGIGFDVKLKPFIQRRDGSAKGDWDVGIALDAIELAEQADIVVILSGDGDFELLVQRI HHHHCCCCEEECHHEEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHH QSRFNKEVEVYGVADLTANALIDAADRFIPIEGNLLL HHHCCCCEEEEEEECHHHHHHHHHHHCEEECCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA