| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is dnaJ [H]
Identifier: 209694797
GI number: 209694797
Start: 1364764
End: 1365657
Strand: Direct
Name: dnaJ [H]
Synonym: VSAL_I1255
Alternate gene names: 209694797
Gene position: 1364764-1365657 (Clockwise)
Preceding gene: 209694796
Following gene: 209694798
Centisome position: 41.04
GC content: 43.18
Gene sequence:
>894_bases ATGTCTAAACGTGATTATTATGAAGTCCTTGGTGTCTCTAAAAGCAGCACAGAAAAAGAGATTAAAAAAGCGTACAAACG TCTTGCGATGAAATACCACCCAGATAAGAATCAGGGTGATCCACAAGCCGCAGACAAGTTCAAAGAAATCAAAGAAGCGT ATGAAATTTTAACGGATGCCGATAAACGCGGGCAATACGATGATTATGGTCACGCTGCATTCCAAAATGGTGGCTCAGGT GGCGGTGGCTTTGGTGGTCAGAGCCAAGGCTACGGCGGATTTGAAGATATTTTTGGTGGTGCATTTGGCGGCGGCGGGCG CAGTCGTGGTGGGTTTGAAGACATGTTCTCTCAACAACGTCGTCCTCGTCCACAAAAAGGCCAAGATCGTCAGTTTAACT TAACAGTTGAATTTGCGGATGCCATTAATGGGTGTGAGCAAGTCATCGAATTACCAATTAATGGCGAGAATAAAAAAATC AACGTCAAAGTACCTGCGGGTATTGATGATGGTGAGAAAATTCGCTTTTCTGGTAAAGGCGAATCTGGAGCCAATGGTGG TCCGGCTGGGGATTTATTAATTCAAATTAATACTCGTCCTCATGAGATTTTAAAACGTGATGGTAACGATTTAATTTGCC CTGTTACAATGGATTTTGCAACCGCAGCCCTTGGTGGTGAAGTTGAGATCCAAACGTTAGAAAGCCGCTTTAAATTGAAA GTGCCAGCAGGTACTCAAAGTGGTCGTAAATTCCGAATGAAAGATAAAGGCGTGAAAGGCCGTAAAGGAATTACAGGGGA TCTAATGGTAGAAATTATCGTAGCGACTCCGACAAATCTAACGGATAAGCAAAAAGAATTATTGATGGCGTTTAGAGATC TAGCGACGGCATAA
Upstream 100 bases:
>100_bases TTAATCTGATAGGACATAAACTCCATTGATTAGTATTATTTTATAACAGGCGTTTGAGCTCTCTCTGACGCCTGTTTCTA TTCATTGACGAGGTTGAGTC
Downstream 100 bases:
>100_bases AACACCAATATTTCGAAATTGGAAGGCATGAACGATGAATATATTATTCAGATTGTTCGTGCCTTTTTTGTCTCTGTATT TTTGATGCTATAAGCGTAAG
Product: chaperone protein DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDPQAADKFKEIKEAYEILTDADKRGQYDDYGHAAFQNGGSG GGGFGGQSQGYGGFEDIFGGAFGGGGRSRGGFEDMFSQQRRPRPQKGQDRQFNLTVEFADAINGCEQVIELPINGENKKI NVKVPAGIDDGEKIRFSGKGESGANGGPAGDLLIQINTRPHEILKRDGNDLICPVTMDFATAALGGEVEIQTLESRFKLK VPAGTQSGRKFRMKDKGVKGRKGITGDLMVEIIVATPTNLTDKQKELLMAFRDLATA
Sequences:
>Translated_297_residues MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDPQAADKFKEIKEAYEILTDADKRGQYDDYGHAAFQNGGSG GGGFGGQSQGYGGFEDIFGGAFGGGGRSRGGFEDMFSQQRRPRPQKGQDRQFNLTVEFADAINGCEQVIELPINGENKKI NVKVPAGIDDGEKIRFSGKGESGANGGPAGDLLIQINTRPHEILKRDGNDLICPVTMDFATAALGGEVEIQTLESRFKLK VPAGTQSGRKFRMKDKGVKGRKGITGDLMVEIIVATPTNLTDKQKELLMAFRDLATA >Mature_296_residues SKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDPQAADKFKEIKEAYEILTDADKRGQYDDYGHAAFQNGGSGG GGFGGQSQGYGGFEDIFGGAFGGGGRSRGGFEDMFSQQRRPRPQKGQDRQFNLTVEFADAINGCEQVIELPINGENKKIN VKVPAGIDDGEKIRFSGKGESGANGGPAGDLLIQINTRPHEILKRDGNDLICPVTMDFATAALGGEVEIQTLESRFKLKV PAGTQSGRKFRMKDKGVKGRKGITGDLMVEIIVATPTNLTDKQKELLMAFRDLATA
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=356, Percent_Identity=29.4943820224719, Blast_Score=146, Evalue=2e-35, Organism=Homo sapiens, GI205360840, Length=354, Percent_Identity=29.3785310734463, Blast_Score=145, Evalue=4e-35, Organism=Homo sapiens, GI5453690, Length=334, Percent_Identity=29.3413173652695, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI201862587, Length=349, Percent_Identity=29.2263610315186, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI201862518, Length=349, Percent_Identity=29.2263610315186, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI56549115, Length=349, Percent_Identity=29.2263610315186, Blast_Score=128, Evalue=5e-30, Organism=Homo sapiens, GI7706495, Length=321, Percent_Identity=29.595015576324, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI6631085, Length=334, Percent_Identity=29.3413173652695, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI39204547, Length=313, Percent_Identity=29.073482428115, Blast_Score=115, Evalue=7e-26, Organism=Homo sapiens, GI9558755, Length=141, Percent_Identity=42.5531914893617, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI4504511, Length=149, Percent_Identity=40.9395973154362, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI194306642, Length=104, Percent_Identity=45.1923076923077, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI194306640, Length=104, Percent_Identity=45.1923076923077, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=62.5, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI47777312, Length=104, Percent_Identity=45.1923076923077, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI194328758, Length=149, Percent_Identity=40.9395973154362, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI194328760, Length=149, Percent_Identity=40.9395973154362, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI29126218, Length=102, Percent_Identity=42.156862745098, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI72534740, Length=130, Percent_Identity=40.7692307692308, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI24308127, Length=98, Percent_Identity=39.7959183673469, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI23503241, Length=104, Percent_Identity=44.2307692307692, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=56.0606060606061, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI88501736, Length=117, Percent_Identity=40.1709401709402, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=56.0606060606061, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI56687498, Length=68, Percent_Identity=57.3529411764706, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI27151736, Length=117, Percent_Identity=40.1709401709402, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=53.7313432835821, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI21553335, Length=76, Percent_Identity=50, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031741, Length=64, Percent_Identity=56.25, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI68077168, Length=85, Percent_Identity=43.5294117647059, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI68077166, Length=85, Percent_Identity=43.5294117647059, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI8922563, Length=71, Percent_Identity=43.6619718309859, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI217035105, Length=74, Percent_Identity=43.2432432432432, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI5453980, Length=116, Percent_Identity=37.9310344827586, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1786197, Length=359, Percent_Identity=43.4540389972145, Blast_Score=257, Evalue=7e-70, Organism=Escherichia coli, GI1787235, Length=307, Percent_Identity=34.2019543973941, Blast_Score=168, Evalue=4e-43, Organism=Caenorhabditis elegans, GI17534355, Length=328, Percent_Identity=32.0121951219512, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI212645553, Length=325, Percent_Identity=28.6153846153846, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI115532378, Length=95, Percent_Identity=42.1052631578947, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17554644, Length=124, Percent_Identity=37.9032258064516, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538236, Length=114, Percent_Identity=39.4736842105263, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17553096, Length=67, Percent_Identity=58.2089552238806, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17553098, Length=67, Percent_Identity=58.2089552238806, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI86563276, Length=116, Percent_Identity=40.5172413793103, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17568643, Length=70, Percent_Identity=48.5714285714286, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=51.6129032258064, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115532476, Length=68, Percent_Identity=50, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17554900, Length=67, Percent_Identity=46.2686567164179, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324321, Length=345, Percent_Identity=28.1159420289855, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6324265, Length=140, Percent_Identity=40, Blast_Score=86, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6323870, Length=354, Percent_Identity=29.6610169491525, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323813, Length=120, Percent_Identity=42.5, Blast_Score=83, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6322194, Length=101, Percent_Identity=42.5742574257426, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6320888, Length=97, Percent_Identity=41.2371134020619, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323119, Length=83, Percent_Identity=48.1927710843374, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322388, Length=109, Percent_Identity=41.2844036697248, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324103, Length=65, Percent_Identity=46.1538461538462, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI85726398, Length=355, Percent_Identity=29.5774647887324, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI19920464, Length=339, Percent_Identity=28.023598820059, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI24658562, Length=272, Percent_Identity=32.7205882352941, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24658555, Length=272, Percent_Identity=32.7205882352941, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI18858081, Length=288, Percent_Identity=29.5138888888889, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI28574949, Length=352, Percent_Identity=26.4204545454545, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24646562, Length=79, Percent_Identity=54.4303797468354, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24646560, Length=79, Percent_Identity=54.4303797468354, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24646558, Length=79, Percent_Identity=54.4303797468354, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24646556, Length=79, Percent_Identity=54.4303797468354, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357547, Length=79, Percent_Identity=54.4303797468354, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI45552813, Length=70, Percent_Identity=57.1428571428571, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI45549272, Length=70, Percent_Identity=57.1428571428571, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI45552811, Length=70, Percent_Identity=57.1428571428571, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24654066, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654070, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654068, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654072, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21358273, Length=67, Percent_Identity=59.7014925373134, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=56.25, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI20129487, Length=80, Percent_Identity=50, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24584014, Length=80, Percent_Identity=50, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24641698, Length=63, Percent_Identity=49.2063492063492, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641696, Length=63, Percent_Identity=49.2063492063492, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24668492, Length=67, Percent_Identity=44.7761194029851, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355073, Length=62, Percent_Identity=51.6129032258064, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355911, Length=95, Percent_Identity=40, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=46.1538461538462, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24651439, Length=65, Percent_Identity=46.1538461538462, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=46.1538461538462, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI17648033, Length=117, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24645889, Length=63, Percent_Identity=46.031746031746, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357687, Length=63, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584630, Length=117, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 32326; Mature: 32195
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDPQAADKFKEIKEAYEILTDA CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCH DKRGQYDDYGHAAFQNGGSGGGGFGGQSQGYGGFEDIFGGAFGGGGRSRGGFEDMFSQQR HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHH RPRPQKGQDRQFNLTVEFADAINGCEQVIELPINGENKKINVKVPAGIDDGEKIRFSGKG CCCCCCCCCCEEEEEEEHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCCEEEEECCC ESGANGGPAGDLLIQINTRPHEILKRDGNDLICPVTMDFATAALGGEVEIQTLESRFKLK CCCCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEEHHHHHHHCCCCEEEEEECCCEEEE VPAGTQSGRKFRMKDKGVKGRKGITGDLMVEIIVATPTNLTDKQKELLMAFRDLATA ECCCCCCCCEEEECCCCCCCCCCCCHHEEEEEEEECCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDPQAADKFKEIKEAYEILTDA CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCH DKRGQYDDYGHAAFQNGGSGGGGFGGQSQGYGGFEDIFGGAFGGGGRSRGGFEDMFSQQR HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHH RPRPQKGQDRQFNLTVEFADAINGCEQVIELPINGENKKINVKVPAGIDDGEKIRFSGKG CCCCCCCCCCEEEEEEEHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCCEEEEECCC ESGANGGPAGDLLIQINTRPHEILKRDGNDLICPVTMDFATAALGGEVEIQTLESRFKLK CCCCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEEHHHHHHHCCCCEEEEEECCCEEEE VPAGTQSGRKFRMKDKGVKGRKGITGDLMVEIIVATPTNLTDKQKELLMAFRDLATA ECCCCCCCCEEEECCCCCCCCCCCCHHEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA