Click here to switch to the map view.

The map label for this gene is ybaE [H]

Identifier: 209694756

GI number: 209694756

Start: 1319907

End: 1321394

Strand: Direct

Name: ybaE [H]

Synonym: VSAL_I1211

Alternate gene names: 209694756

Gene position: 1319907-1321394 (Clockwise)

Preceding gene: 209694755

Following gene: 209694759

Centisome position: 39.69

GC content: 36.96

Gene sequence:

>1488_bases
ATGGAGAATATAAAAAGAAAACTAGAGGTTTATGAAATACTTTTTCGTAAGTATGGACCAGTAGCATCAAGCTGTAATAT
TACAGAGCTTTCATTATTATTGAAGGTGAGTGAACGTCATGTTCAAACTGTAATTAAGAGATTAGTCAATACGGGTTGGA
TTGAATGGAAAGCAACGCCGGGTCGCAGTAAAAAAGCACAATTAACGTGTTATAAAGAACCGATTGAAGCGTGTTATGAC
TGCGTGTCTACTGTAGTCGATTCTGGTAATACTGACTCTGTTTTGAATATACTCAGTTTTGGTGGACGTAATGCTTCTAT
TGAGCTTAAAAAGTATCTTCTCCATTCCAATAACATCGTACCACGCTCGGTTTGTATGCCTTTTCATCGGAAGATTGGCT
CCTTATTACCTCATAACGCAATCTGTCGTACCGAGCGTTATTTAGTGAGTCAAATTTTTCAGCGTTTAGTGAGTATTGAT
AACGATATTATTCACCCTGATTTTGCACATCATTGGGAGCATGATTCTTCTGCAACACAGTGGCGTTTTTATCTTCGAAG
TGGCGTTGTCTGTCATGACGGAAATCCGTTAACGGCAAAAGATGTTGTACGTTGTTTAAAAACACTGATAGCCAACTATT
ATTGGAGTCCACTTTATTCTAACCTCAAAGGGATTAGGTTTCTTTCTGAAGAGTGTATTGAAATCACCTTATCAGAAGGC
GACTTTCATTTGCCAAGATTATTGGCTCGGAGTGAAGCCTCTATTTATCCTATTCATGTATCGACAGATAAGATCGTTGG
TTCTGGTCCATTTCAGGTTGAAGTGTGGTCACCAAGAATGATCCGATTAGGCCGATTTGAGCACTATGCCTTAGTGTTCC
CGTTGTTGGAAAGAGTGGATTTGTGGGTGTATGAAGAATGGGCAAAAGATAAAGTTTGCGCTCAAAACCAGCTAAGTTTG
TCATTTCCAGAAAAGAAAGTTACGTATAAAAGTAAATATCATTCTTTGTTTATGATAATAAAAAAACAAGGCAGTAACTT
GGATTGCTCTAATATAGTGACTTATGAAAACAACAATGAATGCAAAGCTTTAGCCCAAAAATTATATTCATCTCAGACAC
TACAAGACGTTTTTTATGGCGACTACCATCATCAAGCGGATACTGCACTGTGTAGCATTCTTGAAGAAAGTGATCGGTTA
TACAGTCGTCTGGCTTTTTTATCTCTTTATCCGTTTAAAAACAAAATCGTTAAAGACGTTGATTATGATTTATTTCTAAA
TAAGGTATCTGACATAAGAAATACTCCCGATTTAGCGTTAGCGGTTGAAGAGTTGGAGCAACTGTATGATTGGTTACAAC
AGATAGGCGTTATTGATATCGTTAAGAAAGATTCGTTTGAACTCATCACCTCTGAAAATCTAAAAGAGGTAAGAATGAAC
GGTTTTGGTTGGTGTGATTTAGCTAAATTGTGGATAGCTAATCATTAA

Upstream 100 bases:

>100_bases
TGCTTAATACTGAAATCAGTGGGCAGGTATTGTCTATACTAGAGCAAGCGTTAATCACCAACGGATATACACATTTAACG
AAAAGATAAAATTGGGTGCA

Downstream 100 bases:

>100_bases
ACGTTGAGTGCTTGTCTATTTTATATTGCTTTGGTGTCGCGGCAACGATGCTTTTAAAGTGTCGATGAAAGTGACTTTGA
TCGGTAAAGCCAAGATCTGT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MENIKRKLEVYEILFRKYGPVASSCNITELSLLLKVSERHVQTVIKRLVNTGWIEWKATPGRSKKAQLTCYKEPIEACYD
CVSTVVDSGNTDSVLNILSFGGRNASIELKKYLLHSNNIVPRSVCMPFHRKIGSLLPHNAICRTERYLVSQIFQRLVSID
NDIIHPDFAHHWEHDSSATQWRFYLRSGVVCHDGNPLTAKDVVRCLKTLIANYYWSPLYSNLKGIRFLSEECIEITLSEG
DFHLPRLLARSEASIYPIHVSTDKIVGSGPFQVEVWSPRMIRLGRFEHYALVFPLLERVDLWVYEEWAKDKVCAQNQLSL
SFPEKKVTYKSKYHSLFMIIKKQGSNLDCSNIVTYENNNECKALAQKLYSSQTLQDVFYGDYHHQADTALCSILEESDRL
YSRLAFLSLYPFKNKIVKDVDYDLFLNKVSDIRNTPDLALAVEELEQLYDWLQQIGVIDIVKKDSFELITSENLKEVRMN
GFGWCDLAKLWIANH

Sequences:

>Translated_495_residues
MENIKRKLEVYEILFRKYGPVASSCNITELSLLLKVSERHVQTVIKRLVNTGWIEWKATPGRSKKAQLTCYKEPIEACYD
CVSTVVDSGNTDSVLNILSFGGRNASIELKKYLLHSNNIVPRSVCMPFHRKIGSLLPHNAICRTERYLVSQIFQRLVSID
NDIIHPDFAHHWEHDSSATQWRFYLRSGVVCHDGNPLTAKDVVRCLKTLIANYYWSPLYSNLKGIRFLSEECIEITLSEG
DFHLPRLLARSEASIYPIHVSTDKIVGSGPFQVEVWSPRMIRLGRFEHYALVFPLLERVDLWVYEEWAKDKVCAQNQLSL
SFPEKKVTYKSKYHSLFMIIKKQGSNLDCSNIVTYENNNECKALAQKLYSSQTLQDVFYGDYHHQADTALCSILEESDRL
YSRLAFLSLYPFKNKIVKDVDYDLFLNKVSDIRNTPDLALAVEELEQLYDWLQQIGVIDIVKKDSFELITSENLKEVRMN
GFGWCDLAKLWIANH
>Mature_495_residues
MENIKRKLEVYEILFRKYGPVASSCNITELSLLLKVSERHVQTVIKRLVNTGWIEWKATPGRSKKAQLTCYKEPIEACYD
CVSTVVDSGNTDSVLNILSFGGRNASIELKKYLLHSNNIVPRSVCMPFHRKIGSLLPHNAICRTERYLVSQIFQRLVSID
NDIIHPDFAHHWEHDSSATQWRFYLRSGVVCHDGNPLTAKDVVRCLKTLIANYYWSPLYSNLKGIRFLSEECIEITLSEG
DFHLPRLLARSEASIYPIHVSTDKIVGSGPFQVEVWSPRMIRLGRFEHYALVFPLLERVDLWVYEEWAKDKVCAQNQLSL
SFPEKKVTYKSKYHSLFMIIKKQGSNLDCSNIVTYENNNECKALAQKLYSSQTLQDVFYGDYHHQADTALCSILEESDRL
YSRLAFLSLYPFKNKIVKDVDYDLFLNKVSDIRNTPDLALAVEELEQLYDWLQQIGVIDIVKKDSFELITSENLKEVRMN
GFGWCDLAKLWIANH

Specific function: Unknown

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786650, Length=302, Percent_Identity=27.4834437086093, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1786256, Length=349, Percent_Identity=27.5071633237822, Blast_Score=123, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57200; Mature: 57200

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIKRKLEVYEILFRKYGPVASSCNITELSLLLKVSERHVQTVIKRLVNTGWIEWKATP
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GRSKKAQLTCYKEPIEACYDCVSTVVDSGNTDSVLNILSFGGRNASIELKKYLLHSNNIV
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
PRSVCMPFHRKIGSLLPHNAICRTERYLVSQIFQRLVSIDNDIIHPDFAHHWEHDSSATQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHH
WRFYLRSGVVCHDGNPLTAKDVVRCLKTLIANYYWSPLYSNLKGIRFLSEECIEITLSEG
HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCC
DFHLPRLLARSEASIYPIHVSTDKIVGSGPFQVEVWSPRMIRLGRFEHYALVFPLLERVD
CCHHHHHHHCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
LWVYEEWAKDKVCAQNQLSLSFPEKKVTYKSKYHSLFMIIKKQGSNLDCSNIVTYENNNE
HHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCEEEECCCCH
CKALAQKLYSSQTLQDVFYGDYHHQADTALCSILEESDRLYSRLAFLSLYPFKNKIVKDV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
DYDLFLNKVSDIRNTPDLALAVEELEQLYDWLQQIGVIDIVKKDSFELITSENLKEVRMN
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCHHHHHHC
GFGWCDLAKLWIANH
CCCHHHHHHHHHCCC
>Mature Secondary Structure
MENIKRKLEVYEILFRKYGPVASSCNITELSLLLKVSERHVQTVIKRLVNTGWIEWKATP
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GRSKKAQLTCYKEPIEACYDCVSTVVDSGNTDSVLNILSFGGRNASIELKKYLLHSNNIV
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
PRSVCMPFHRKIGSLLPHNAICRTERYLVSQIFQRLVSIDNDIIHPDFAHHWEHDSSATQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHH
WRFYLRSGVVCHDGNPLTAKDVVRCLKTLIANYYWSPLYSNLKGIRFLSEECIEITLSEG
HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCC
DFHLPRLLARSEASIYPIHVSTDKIVGSGPFQVEVWSPRMIRLGRFEHYALVFPLLERVD
CCHHHHHHHCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
LWVYEEWAKDKVCAQNQLSLSFPEKKVTYKSKYHSLFMIIKKQGSNLDCSNIVTYENNNE
HHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCEEEECCCCH
CKALAQKLYSSQTLQDVFYGDYHHQADTALCSILEESDRLYSRLAFLSLYPFKNKIVKDV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
DYDLFLNKVSDIRNTPDLALAVEELEQLYDWLQQIGVIDIVKKDSFELITSENLKEVRMN
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCHHHHHHC
GFGWCDLAKLWIANH
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]