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The map label for this gene is ndpA [C]

Identifier: 209694619

GI number: 209694619

Start: 1151562

End: 1152578

Strand: Direct

Name: ndpA [C]

Synonym: VSAL_I1059

Alternate gene names: 209694619

Gene position: 1151562-1152578 (Clockwise)

Preceding gene: 209694615

Following gene: 209694620

Centisome position: 34.63

GC content: 37.27

Gene sequence:

>1017_bases
ATGAGTTTAATCCTTTCAAACGTAATTTTACATAAATTAGTAAAAAATGAGCAAGATGAGCTTGAAGTTTGTCTACGAAA
TCAACTTCTTGAGAATGAAGAATTTACTGAAGCCTTAGTTTCTGAGCTGCACAGAGTGTTTAATTCAAAAGCAGGTAAAG
GTTTTGGTATTTTCAAGACTGAAAGTGAATTTGGTCACTGGTTAGGTTCTGTTCGTAAGAATGAAACCCCATTTTTAGAG
TTTAGTAATAAATCAGCGGAAAAGCTGAAATCTGAGCTGATCAAATACCCATTTGCAGAAGAAGGTATCCTCGTTATCGC
AGAGTACCAATCTTTAGCAACAGAATATTTATTTGTGGCAGTTTTGCCATCAAATGAGAGCATGAAAGTTACTGATGAGC
TGAATATCAGTGCGACTGATTATCTTGATATTGCGAAAATGGATATCGCAGCGCGTATTGATTTATCAACATGGGAAACA
GATTCAGACTCTAATCGGTACCTTACTTTTATTAAAGGTAGAGTGGGTCGCAAAGTATCTGACTTCTTCTTAGATTTCTT
ACAAGCAGATGTTGGTATGGATACGAAGGTTCAAAACCAAGTATTAATGCAAGCCGTTGAAGATTTCTGTGCTGATGAAC
GGTTAGAGAAAGAAGAAAAACAACAGTACCGTAAGCAAGTATATGATTACTGTAATGGTCAATTACAAGCTGGTGAAGAG
TTAACGGTAAAAGAATTATCAGGTGAATTACCGACATCGGAATCTGGTTCTAATTTCTATCAATTTGCTGAAGAGCAGGG
TTATGAGTTAGAAGAGTCTTTTCCTGTTGATCGTACGGCATTACGTAAGCTGACTAAGTTTGTGGGTGCTGGTGGTGGTT
TGTCATTGAATTTTGATGCGATGTTATTGGGGGAGCGTGTATTTTACGATCCAGAAACCGATACATTAACCATTAAGGGC
ACTCCTCCTAACCTAAAAGATCAATTAACACGCCGTTTAGGTTCTTCTGAATCATAG

Upstream 100 bases:

>100_bases
GCTGTATTTCGAAGTAATAGCCATAAGTCTTTTCAGTTAATGATAGTGAAAGCGGCTTATGATAACCTACTATGTACGTC
AACTAAAAACCTTTTCTATT

Downstream 100 bases:

>100_bases
ATGGTATGTATTTGTTCATGTAATAAATGTGAAAATAGCGGTATTTTTATCGTAGATATTAACTATCTAAGTTAATTGTT
TTTTACAAAATGCTACCCTA

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSLILSNVILHKLVKNEQDELEVCLRNQLLENEEFTEALVSELHRVFNSKAGKGFGIFKTESEFGHWLGSVRKNETPFLE
FSNKSAEKLKSELIKYPFAEEGILVIAEYQSLATEYLFVAVLPSNESMKVTDELNISATDYLDIAKMDIAARIDLSTWET
DSDSNRYLTFIKGRVGRKVSDFFLDFLQADVGMDTKVQNQVLMQAVEDFCADERLEKEEKQQYRKQVYDYCNGQLQAGEE
LTVKELSGELPTSESGSNFYQFAEEQGYELEESFPVDRTALRKLTKFVGAGGGLSLNFDAMLLGERVFYDPETDTLTIKG
TPPNLKDQLTRRLGSSES

Sequences:

>Translated_338_residues
MSLILSNVILHKLVKNEQDELEVCLRNQLLENEEFTEALVSELHRVFNSKAGKGFGIFKTESEFGHWLGSVRKNETPFLE
FSNKSAEKLKSELIKYPFAEEGILVIAEYQSLATEYLFVAVLPSNESMKVTDELNISATDYLDIAKMDIAARIDLSTWET
DSDSNRYLTFIKGRVGRKVSDFFLDFLQADVGMDTKVQNQVLMQAVEDFCADERLEKEEKQQYRKQVYDYCNGQLQAGEE
LTVKELSGELPTSESGSNFYQFAEEQGYELEESFPVDRTALRKLTKFVGAGGGLSLNFDAMLLGERVFYDPETDTLTIKG
TPPNLKDQLTRRLGSSES
>Mature_337_residues
SLILSNVILHKLVKNEQDELEVCLRNQLLENEEFTEALVSELHRVFNSKAGKGFGIFKTESEFGHWLGSVRKNETPFLEF
SNKSAEKLKSELIKYPFAEEGILVIAEYQSLATEYLFVAVLPSNESMKVTDELNISATDYLDIAKMDIAARIDLSTWETD
SDSNRYLTFIKGRVGRKVSDFFLDFLQADVGMDTKVQNQVLMQAVEDFCADERLEKEEKQQYRKQVYDYCNGQLQAGEEL
TVKELSGELPTSESGSNFYQFAEEQGYELEESFPVDRTALRKLTKFVGAGGGLSLNFDAMLLGERVFYDPETDTLTIKGT
PPNLKDQLTRRLGSSES

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=332, Percent_Identity=56.3253012048193, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_ALISL (B6EIV0)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262547.1
- GeneID:   6986827
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1059
- HOGENOM:   HBG296787
- OMA:   TESEFGH
- ProtClustDB:   PRK00378
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 38332; Mature: 38201

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLILSNVILHKLVKNEQDELEVCLRNQLLENEEFTEALVSELHRVFNSKAGKGFGIFKT
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC
ESEFGHWLGSVRKNETPFLEFSNKSAEKLKSELIKYPFAEEGILVIAEYQSLATEYLFVA
CHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHEEEEEE
VLPSNESMKVTDELNISATDYLDIAKMDIAARIDLSTWETDSDSNRYLTFIKGRVGRKVS
EECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCHHCCHHH
DFFLDFLQADVGMDTKVQNQVLMQAVEDFCADERLEKEEKQQYRKQVYDYCNGQLQAGEE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LTVKELSGELPTSESGSNFYQFAEEQGYELEESFPVDRTALRKLTKFVGAGGGLSLNFDA
CHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCEECCHH
MLLGERVFYDPETDTLTIKGTPPNLKDQLTRRLGSSES
EEECCEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLILSNVILHKLVKNEQDELEVCLRNQLLENEEFTEALVSELHRVFNSKAGKGFGIFKT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC
ESEFGHWLGSVRKNETPFLEFSNKSAEKLKSELIKYPFAEEGILVIAEYQSLATEYLFVA
CHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHEEEEEE
VLPSNESMKVTDELNISATDYLDIAKMDIAARIDLSTWETDSDSNRYLTFIKGRVGRKVS
EECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCHHCCHHH
DFFLDFLQADVGMDTKVQNQVLMQAVEDFCADERLEKEEKQQYRKQVYDYCNGQLQAGEE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LTVKELSGELPTSESGSNFYQFAEEQGYELEESFPVDRTALRKLTKFVGAGGGLSLNFDA
CHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCEECCHH
MLLGERVFYDPETDTLTIKGTPPNLKDQLTRRLGSSES
EEECCEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA