| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694585
Identifier: 209694585
GI number: 209694585
Start: 1121338
End: 1121802
Strand: Reverse
Name: 209694585
Synonym: VSAL_I1024
Alternate gene names: NA
Gene position: 1121802-1121338 (Counterclockwise)
Preceding gene: 209694586
Following gene: 209694571
Centisome position: 33.74
GC content: 39.35
Gene sequence:
>465_bases ATGGTTTTGTCAGTCAGAGAGGTGTTTATGCGAGTTTTATGTCAGTGTGGTACTGCGGCTATCGTTAGCCGAAATAATAT TACCGAAGCGGTTTGTGAATTATCTTGCTCTTGTAAAGATGCCGAATGCGGCCATTCTTTTATTACGTCTATTTGCTATA AGCATACGTTAGTGCATTCACACATTGAATTGCATAACGGGGCAACAATGGAAGGGAATCGAATTCGTTGCGGATGTGGA GAACGCGCAGTCATTAAGAAAACAAATCGTCTTTCTTATGACTGCGCTGATTTATATTGCGAGTGTAAAAATACAAATTG TAAGCATCAATTTGTTATGTCTTTATATTATAGTCACACCCTAAGCCCATCAGCTAAAACAACTGATACTTTGGTATACT CATTGATTAAAGCACTGCCCCCTCAAACAAGACATGACCTTGGTCGCCAACTCTCTATGTTTTAG
Upstream 100 bases:
>100_bases TACGCTTTAACATTGACATAGAAAAGACCGCTTAAAGAATAAAACACCTTCACGCAAACCGTTTCGTTTTACTGTACATA AACACAGCAAGGAACATATA
Downstream 100 bases:
>100_bases TTTGCCATTACGCCAACACTGCCTACTTCAAAAGCCATCTCAAAAATACATAAGATGGCTTTTTGCTTTTCTGGATCTAA TATCCCTTTGTTATCCGCCA
Product: phage zinc-binding transcriptional activator
Products: NA
Alternate protein names: Phage Transcriptional Activator Ogr/Delta; Zinc-Finger Protein; Phage Gene; Bacteriophage Transcription Regulator Protein; Phage Protein
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF
Sequences:
>Translated_154_residues MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF >Mature_154_residues MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17274; Mature: 17274
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 11.7 %Cys+Met (Translated Protein) 8.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 11.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHS CEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH HIELHNGATMEGNRIRCGCGERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHT HHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHC LSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHS CEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH HIELHNGATMEGNRIRCGCGERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHT HHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHC LSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA