Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694578

Identifier: 209694578

GI number: 209694578

Start: 1115885

End: 1116157

Strand: Direct

Name: 209694578

Synonym: VSAL_I1017

Alternate gene names: NA

Gene position: 1115885-1116157 (Clockwise)

Preceding gene: 209694577

Following gene: 209694579

Centisome position: 33.56

GC content: 35.53

Gene sequence:

>273_bases
ATGAGTAAATCATGTAATTGTTTTGAAGAAACCCGCAATAAAGCAAAAGAACATATTAGAGCTAAGTTACCAAGAGACAT
CGTTGATTTTTCTGTAAGTTGGAAAGACGCCGCAATCTTTTTTAGTGGTGATCATGTTCCTGTAAATCCTAGTCTTGAAG
TCACTTATCGAAAAATTAAGAAAGATAAAGCACCTGCTAAAAACCTGACTAAAGATTCAATTGGAATTATGTGCAGTTAC
TGTCCTTTCTGTGGCCGTAAGCTAGGGGAATAA

Upstream 100 bases:

>100_bases
CCATTGCATTTATGCAGAACCACGGCGTTGCACCAACCGAAAGCCAATTAGATGGCTGGTTAGAAGTGTATGCAGTACTT
GAAAGTAAAGGGGAATAGAG

Downstream 100 bases:

>100_bases
TCATGCTTCGTTTCCTTGCAGTTGTTTTAAACAGTGGCGGCGGTGTGGTTCGTGATGCCAAAACTGACGAAATTCAAATT
AAAGAGTTAGGCGAGTATGA

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSKSCNCFEETRNKAKEHIRAKLPRDIVDFSVSWKDAAIFFSGDHVPVNPSLEVTYRKIKKDKAPAKNLTKDSIGIMCSY
CPFCGRKLGE

Sequences:

>Translated_90_residues
MSKSCNCFEETRNKAKEHIRAKLPRDIVDFSVSWKDAAIFFSGDHVPVNPSLEVTYRKIKKDKAPAKNLTKDSIGIMCSY
CPFCGRKLGE
>Mature_89_residues
SKSCNCFEETRNKAKEHIRAKLPRDIVDFSVSWKDAAIFFSGDHVPVNPSLEVTYRKIKKDKAPAKNLTKDSIGIMCSYC
PFCGRKLGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10198; Mature: 10067

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSCNCFEETRNKAKEHIRAKLPRDIVDFSVSWKDAAIFFSGDHVPVNPSLEVTYRKIK
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
KDKAPAKNLTKDSIGIMCSYCPFCGRKLGE
HCCCCCCCCCCCCHHHHHHHCCHHHHHCCC
>Mature Secondary Structure 
SKSCNCFEETRNKAKEHIRAKLPRDIVDFSVSWKDAAIFFSGDHVPVNPSLEVTYRKIK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
KDKAPAKNLTKDSIGIMCSYCPFCGRKLGE
HCCCCCCCCCCCCHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA