| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694576
Identifier: 209694576
GI number: 209694576
Start: 1115353
End: 1115754
Strand: Direct
Name: 209694576
Synonym: VSAL_I1015
Alternate gene names: NA
Gene position: 1115353-1115754 (Clockwise)
Preceding gene: 209694575
Following gene: 209694577
Centisome position: 33.54
GC content: 42.54
Gene sequence:
>402_bases ATGAGTGTTATTTCTGTATATCAAGCTGATCTAGAATTTGCCCTTCGTGGTGCAGGTTTTACCTCTCGAAAAATCAACAT GTTCTTAAAAGCATTTAACAAAGAAACCGTATCACAAGGCGTGATTTGCTCGCTTGATTCACAACGCGCCATGCTTGTGA ATGTTAACGGTACTGAGCAAGGTTTATGTCTTTCTGATTTTATCACTGCTTGGTGGTCGTTTTGGGTTGTGGTTTTTGAT ACGACAAATAACCCTGATTTAGAGCAGCAATCCCTTGGCGCTATTCGTGCCCTTTTCTTTATTTCTTCTTCGTGCCGTTC GGTTGCCCAGCAATCAATGATGCAAACATGGTGGCGTGATTTTGAGCCAGAACACGGCTCGCCAATGTTGGAGTCAATCT AA
Upstream 100 bases:
>100_bases CTGATTTGAGTGAATCTAATGCACTTGCGCGATGTATTCAAATAGAAAGCAAATTTGCTGAACTTATCATTGAAGCAAAA GACAACGCAGAGGTAACGGC
Downstream 100 bases:
>100_bases TGAACAAAGATAAGTTCTTAGCGAAGATGTCCATTGCATTTATGCAGAACCACGGCGTTGCACCAACCGAAAGCCAATTA GATGGCTGGTTAGAAGTGTA
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MSVISVYQADLEFALRGAGFTSRKINMFLKAFNKETVSQGVICSLDSQRAMLVNVNGTEQGLCLSDFITAWWSFWVVVFD TTNNPDLEQQSLGAIRALFFISSSCRSVAQQSMMQTWWRDFEPEHGSPMLESI
Sequences:
>Translated_133_residues MSVISVYQADLEFALRGAGFTSRKINMFLKAFNKETVSQGVICSLDSQRAMLVNVNGTEQGLCLSDFITAWWSFWVVVFD TTNNPDLEQQSLGAIRALFFISSSCRSVAQQSMMQTWWRDFEPEHGSPMLESI >Mature_132_residues SVISVYQADLEFALRGAGFTSRKINMFLKAFNKETVSQGVICSLDSQRAMLVNVNGTEQGLCLSDFITAWWSFWVVVFDT TNNPDLEQQSLGAIRALFFISSSCRSVAQQSMMQTWWRDFEPEHGSPMLESI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15031; Mature: 14900
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVISVYQADLEFALRGAGFTSRKINMFLKAFNKETVSQGVICSLDSQRAMLVNVNGTEQ CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCCCEEEECCCCEEEEEECCCCC GLCLSDFITAWWSFWVVVFDTTNNPDLEQQSLGAIRALFFISSSCRSVAQQSMMQTWWRD CCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC FEPEHGSPMLESI CCCCCCCCHHHCC >Mature Secondary Structure SVISVYQADLEFALRGAGFTSRKINMFLKAFNKETVSQGVICSLDSQRAMLVNVNGTEQ CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCCCEEEECCCCEEEEEECCCCC GLCLSDFITAWWSFWVVVFDTTNNPDLEQQSLGAIRALFFISSSCRSVAQQSMMQTWWRD CCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC FEPEHGSPMLESI CCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA