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The map label for this gene is int [H]

Identifier: 209694569

GI number: 209694569

Start: 1110598

End: 1111641

Strand: Reverse

Name: int [H]

Synonym: VSAL_I1008

Alternate gene names: 209694569

Gene position: 1111641-1110598 (Counterclockwise)

Preceding gene: 209694570

Following gene: 209694567

Centisome position: 33.43

GC content: 40.71

Gene sequence:

>1044_bases
ATGACAGTAAAAAAACTAGACACCGACACTAAAAAACCATGGCTTTGCGATATTTACCCGCAAGGTAGAAACGGCAAGCG
AGTAAGAAAACACTTTGCCACTAAAGGCGAGGCACTTGCGTATGAAAAGTTTGTGCTAAAAGAAGCCGACACCACGCCAT
GGGCAGGTAAAAAAATCGAACGTCGAAGTTTGCTAGATATGATAGACATGTGGCAAGAGAGACACGGCCAATCACTTGCA
CATCAAAAATACACCTACCGAAAACTAAAAGTAATTGCGCTTGGCATGGGCGACCCAATTTATACCAGGCTAACGCCCAA
ACACTTTTTAGAATACAGAACGGCTCGTTTGGCTGGGCAAATTACAAACCTTAGCGGTAAAAAAGAACCGGTATCTTTTC
GCACTTGTAATATTGAGCATGATTTATTGAACGCGGTGATTAACGAGTTGCGCCGCATGGAAGAATGGAAGTGCGAAAAC
CCGCTTCAATCGGTTCGACAATTTAAACTGCATGAATCTGAAATGGAGTTTTTGACCATGGATGAAATGAAGTTGTTGAT
CACCGATGCCGAAAATTACGAAACCCACGATGATATGCATAAAATAATTAAATTATGTTTGGCTACTGGCGGTCGCTTTT
TAGAAGTTTCAAAATTAACTGGTTCACAACTTTCTAAATATAAAGTGACGTTTACTCAAACTAAGGGAAAGAAGAACCGC
ACCGTTCCAATTAGCCAAGACCTTTACGCTGAAATTTACAAAGAAGACTCAGGCCCACTTTTTAAAATAGGCTACTCTAC
TGTTTACCGTTTTATTTCAAAACGAGTTCCACGACTAACCCACCAAGCGGCTCATGTTATGCGCCACACTTTTGCATCTT
ATTACATGATGAACGGCGGCAATATTATCGCTCTGCAAAGAATATTAGGTCATACCGATATTAAACAAACGATGAGATAC
GCTCACTTAGCCCCTGACCACTTAGAAGATGTAGTCACCAAAAACCCGCTTTATATCATCAAAAATGACTACAAAACCGA
TTGA

Upstream 100 bases:

>100_bases
ACTGTTTAAACAGTGGCGGTAGACTGCCTAAAAAATAATAAATCTGGTACCGCAATGAAAACCGCTTTAATCGGCGGTTT
CTTTTAATAAGACTTATATC

Downstream 100 bases:

>100_bases
TTTAATGACTACAAATTGACTACATAATTTACCAACATGTGCATTTATATATGGTTATTTGTACAGTGTTGATTTTTAAG
TTACTGAAAACCCTTGTATA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTVKKLDTDTKKPWLCDIYPQGRNGKRVRKHFATKGEALAYEKFVLKEADTTPWAGKKIERRSLLDMIDMWQERHGQSLA
HQKYTYRKLKVIALGMGDPIYTRLTPKHFLEYRTARLAGQITNLSGKKEPVSFRTCNIEHDLLNAVINELRRMEEWKCEN
PLQSVRQFKLHESEMEFLTMDEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTFTQTKGKKNR
TVPISQDLYAEIYKEDSGPLFKIGYSTVYRFISKRVPRLTHQAAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRY
AHLAPDHLEDVVTKNPLYIIKNDYKTD

Sequences:

>Translated_347_residues
MTVKKLDTDTKKPWLCDIYPQGRNGKRVRKHFATKGEALAYEKFVLKEADTTPWAGKKIERRSLLDMIDMWQERHGQSLA
HQKYTYRKLKVIALGMGDPIYTRLTPKHFLEYRTARLAGQITNLSGKKEPVSFRTCNIEHDLLNAVINELRRMEEWKCEN
PLQSVRQFKLHESEMEFLTMDEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTFTQTKGKKNR
TVPISQDLYAEIYKEDSGPLFKIGYSTVYRFISKRVPRLTHQAAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRY
AHLAPDHLEDVVTKNPLYIIKNDYKTD
>Mature_346_residues
TVKKLDTDTKKPWLCDIYPQGRNGKRVRKHFATKGEALAYEKFVLKEADTTPWAGKKIERRSLLDMIDMWQERHGQSLAH
QKYTYRKLKVIALGMGDPIYTRLTPKHFLEYRTARLAGQITNLSGKKEPVSFRTCNIEHDLLNAVINELRRMEEWKCENP
LQSVRQFKLHESEMEFLTMDEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTFTQTKGKKNRT
VPISQDLYAEIYKEDSGPLFKIGYSTVYRFISKRVPRLTHQAAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYA
HLAPDHLEDVVTKNPLYIIKNDYKTD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=153, Percent_Identity=28.7581699346405, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40482; Mature: 40351

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKKLDTDTKKPWLCDIYPQGRNGKRVRKHFATKGEALAYEKFVLKEADTTPWAGKKIE
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHH
RRSLLDMIDMWQERHGQSLAHQKYTYRKLKVIALGMGDPIYTRLTPKHFLEYRTARLAGQ
HHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHH
ITNLSGKKEPVSFRTCNIEHDLLNAVINELRRMEEWKCENPLQSVRQFKLHESEMEFLTM
HHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEC
DEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTFTQTKGKKNR
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEECCCCCCC
TVPISQDLYAEIYKEDSGPLFKIGYSTVYRFISKRVPRLTHQAAHVMRHTFASYYMMNGG
CCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCC
NIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTKNPLYIIKNDYKTD
CEEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
TVKKLDTDTKKPWLCDIYPQGRNGKRVRKHFATKGEALAYEKFVLKEADTTPWAGKKIE
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHH
RRSLLDMIDMWQERHGQSLAHQKYTYRKLKVIALGMGDPIYTRLTPKHFLEYRTARLAGQ
HHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHH
ITNLSGKKEPVSFRTCNIEHDLLNAVINELRRMEEWKCENPLQSVRQFKLHESEMEFLTM
HHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEC
DEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTFTQTKGKKNR
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEECCCCCCC
TVPISQDLYAEIYKEDSGPLFKIGYSTVYRFISKRVPRLTHQAAHVMRHTFASYYMMNGG
CCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCC
NIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTKNPLYIIKNDYKTD
CEEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]