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The map label for this gene is lptE [H]

Identifier: 209694552

GI number: 209694552

Start: 1091774

End: 1092406

Strand: Reverse

Name: lptE [H]

Synonym: VSAL_I0989

Alternate gene names: 209694552

Gene position: 1092406-1091774 (Counterclockwise)

Preceding gene: 209694553

Following gene: 209694551

Centisome position: 32.85

GC content: 38.7

Gene sequence:

>633_bases
TTGAGGGAGTTCTCGGTGAAACGACTTTTATCTCTATTTTCAATCCGCGCAGTCATCATTATTGCTCTTTCTATTATGAC
CTCAGCTTGCGGTTTCCAGTTACGTGGTAGCTATTTACTTCCAGAAGAAGTTCATGAGGTATCATTAACGAGTTTTGACC
AATACAGTAATTTAACCCGTGATGTTCAAAAACAACTGAGAATGAATGGGGTTAAACAAGTTGCACCGACAACGGTAACG
CCTACGCTCAACCTGATCAGCGAAACAACAAGTGAGCGTACGCTTTCACTTTATCAAAATAGCCGTGCGGCAGAAATAGA
ACTGACTTATACGGTTCAATACAGTGTTCTTATTCCTGGCCATGATTTAAAAACCTATACCACCACCGTAAATCGTAACT
ATCTTGATAACCCATTAACTGCATTAGCCAAATCAGTTGAACGAGACATGATTGAAGATGAAATGCGAACTCAAGCCGCA
GAACAAATTCTACGTCAAATGGCGCGTTTAAAAGCAGATGGCGAATTATTAGATGATACTGATATTATTAGCAACAAAGA
CGAAACAGAAACTAAAGTAACAACAAAAGAGATGGCTCAAAGTATGGCTACCTCTACAGATAATAAAAAATAA

Upstream 100 bases:

>100_bases
AAGCAGTCTATCTGCTTATGCTTATTTAAGCGCTTTAATTATCATTACTTACTATGAGCCAAATTATTAAACACGTTTAA
ATAAGCATTTTTATCACCAT

Downstream 100 bases:

>100_bases
TCATGCGAGTATTCCCTGAACAGCTAGTACAAAACTTAGAACGTGGTTTACGTCAAAATTACCTATTATTTGGTAATGAG
CCACTTCTAAAACAAGAATG

Product: rare lipoprotein B precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MREFSVKRLLSLFSIRAVIIIALSIMTSACGFQLRGSYLLPEEVHEVSLTSFDQYSNLTRDVQKQLRMNGVKQVAPTTVT
PTLNLISETTSERTLSLYQNSRAAEIELTYTVQYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEDEMRTQAA
EQILRQMARLKADGELLDDTDIISNKDETETKVTTKEMAQSMATSTDNKK

Sequences:

>Translated_210_residues
MREFSVKRLLSLFSIRAVIIIALSIMTSACGFQLRGSYLLPEEVHEVSLTSFDQYSNLTRDVQKQLRMNGVKQVAPTTVT
PTLNLISETTSERTLSLYQNSRAAEIELTYTVQYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEDEMRTQAA
EQILRQMARLKADGELLDDTDIISNKDETETKVTTKEMAQSMATSTDNKK
>Mature_210_residues
MREFSVKRLLSLFSIRAVIIIALSIMTSACGFQLRGSYLLPEEVHEVSLTSFDQYSNLTRDVQKQLRMNGVKQVAPTTVT
PTLNLISETTSERTLSLYQNSRAAEIELTYTVQYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEDEMRTQAA
EQILRQMARLKADGELLDDTDIISNKDETETKVTTKEMAQSMATSTDNKK

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=160, Percent_Identity=36.25, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 23723; Mature: 23723

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREFSVKRLLSLFSIRAVIIIALSIMTSACGFQLRGSYLLPEEVHEVSLTSFDQYSNLTR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHH
DVQKQLRMNGVKQVAPTTVTPTLNLISETTSERTLSLYQNSRAAEIELTYTVQYSVLIPG
HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECC
HDLKTYTTTVNRNYLDNPLTALAKSVERDMIEDEMRTQAAEQILRQMARLKADGELLDDT
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DIISNKDETETKVTTKEMAQSMATSTDNKK
HHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MREFSVKRLLSLFSIRAVIIIALSIMTSACGFQLRGSYLLPEEVHEVSLTSFDQYSNLTR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHH
DVQKQLRMNGVKQVAPTTVTPTLNLISETTSERTLSLYQNSRAAEIELTYTVQYSVLIPG
HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECC
HDLKTYTTTVNRNYLDNPLTALAKSVERDMIEDEMRTQAAEQILRQMARLKADGELLDDT
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DIISNKDETETKVTTKEMAQSMATSTDNKK
HHCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA