Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694437

Identifier: 209694437

GI number: 209694437

Start: 957853

End: 958560

Strand: Direct

Name: 209694437

Synonym: VSAL_I0858

Alternate gene names: NA

Gene position: 957853-958560 (Clockwise)

Preceding gene: 209694434

Following gene: 209694438

Centisome position: 28.81

GC content: 37.15

Gene sequence:

>708_bases
ATGTTTTTTCAAACCTTACAATATATTCTTATTCCTGCACTGTTAGGTGCACAAATCCTGTTAACTATTATTTTGCATAA
AGGCGATATTTGTCCTGGTCAACGAGGACGAATTCACAAATGGTTACCAGTATTAATTTTAGGTTGGTGCCTTATTGCGG
GCGTTGGGATGACTTACGCGATGGTTTTTGCCATTAATCTTATTCCTGCAATTGCCATTGCTGGGTTTTATTTTAGTGTT
AAAACAAGTAAAACTCGAGATAAAGGGCCTCTAATTATTATGGCTCTAGCGAATGGGTTTGCAGCCGCAAGTTTTGTTAA
TTTGGCGTTAGGCTCCGGCTCATTTACGCAATTGTTTTTTGCTCTTATTGGTCCTTTCTTGTTTGGTGCTTTGTTAACTC
ATCTTTTATTAACGTTGGCACGAACTCGCTTACAGGCATTTCATCGATTATTACCCATCAGTGGAATTATTAGCGGCATA
GTGATGGTTGTTATCTTACTATGTCAAACCCTAAGTATTCATGAAATCTTCTTAGACAGAATGGCTGTTAAGTTGGGTAT
TGGTTTAGGACTGATGTTACTGAGCCTTGGTTTATGGAACTTTCACTTGTTTAATAAGCAAGCCGCTAAATGGCAATTTT
TAGTACCAGCAAGCATTATTATGGCTATTTCTGGTTATTATCAATTTCAGTTGTTTTTTGTGATGTAG

Upstream 100 bases:

>100_bases
ATGTTTTGAGATGTTGAGTAGATATGGTTGTTTTTTCACCGTACTAGACGAAGTGAAAATAGGGTTTATACTAGCGTTAT
TCTAATCCAGTGGCGTAATT

Downstream 100 bases:

>100_bases
CCCACGTCTTGCTTCCAAAATCTGGTCTATTCTAATCTTGTCTCTTAAGCAATATGGAGGGTGAAGATTGGATTTAAGTA
ATGCTCATGGCCTAGAAAGT

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MFFQTLQYILIPALLGAQILLTIILHKGDICPGQRGRIHKWLPVLILGWCLIAGVGMTYAMVFAINLIPAIAIAGFYFSV
KTSKTRDKGPLIIMALANGFAAASFVNLALGSGSFTQLFFALIGPFLFGALLTHLLLTLARTRLQAFHRLLPISGIISGI
VMVVILLCQTLSIHEIFLDRMAVKLGIGLGLMLLSLGLWNFHLFNKQAAKWQFLVPASIIMAISGYYQFQLFFVM

Sequences:

>Translated_235_residues
MFFQTLQYILIPALLGAQILLTIILHKGDICPGQRGRIHKWLPVLILGWCLIAGVGMTYAMVFAINLIPAIAIAGFYFSV
KTSKTRDKGPLIIMALANGFAAASFVNLALGSGSFTQLFFALIGPFLFGALLTHLLLTLARTRLQAFHRLLPISGIISGI
VMVVILLCQTLSIHEIFLDRMAVKLGIGLGLMLLSLGLWNFHLFNKQAAKWQFLVPASIIMAISGYYQFQLFFVM
>Mature_235_residues
MFFQTLQYILIPALLGAQILLTIILHKGDICPGQRGRIHKWLPVLILGWCLIAGVGMTYAMVFAINLIPAIAIAGFYFSV
KTSKTRDKGPLIIMALANGFAAASFVNLALGSGSFTQLFFALIGPFLFGALLTHLLLTLARTRLQAFHRLLPISGIISGI
VMVVILLCQTLSIHEIFLDRMAVKLGIGLGLMLLSLGLWNFHLFNKQAAKWQFLVPASIIMAISGYYQFQLFFVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25886; Mature: 25886

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFQTLQYILIPALLGAQILLTIILHKGDICPGQRGRIHKWLPVLILGWCLIAGVGMTYA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MVFAINLIPAIAIAGFYFSVKTSKTRDKGPLIIMALANGFAAASFVNLALGSGSFTQLFF
HHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHH
ALIGPFLFGALLTHLLLTLARTRLQAFHRLLPISGIISGIVMVVILLCQTLSIHEIFLDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAVKLGIGLGLMLLSLGLWNFHLFNKQAAKWQFLVPASIIMAISGYYQFQLFFVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEC
>Mature Secondary Structure
MFFQTLQYILIPALLGAQILLTIILHKGDICPGQRGRIHKWLPVLILGWCLIAGVGMTYA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MVFAINLIPAIAIAGFYFSVKTSKTRDKGPLIIMALANGFAAASFVNLALGSGSFTQLFF
HHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHH
ALIGPFLFGALLTHLLLTLARTRLQAFHRLLPISGIISGIVMVVILLCQTLSIHEIFLDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAVKLGIGLGLMLLSLGLWNFHLFNKQAAKWQFLVPASIIMAISGYYQFQLFFVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA