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The map label for this gene is yebA [H]

Identifier: 209694432

GI number: 209694432

Start: 949494

End: 950834

Strand: Direct

Name: yebA [H]

Synonym: VSAL_I0853

Alternate gene names: 209694432

Gene position: 949494-950834 (Clockwise)

Preceding gene: 209694431

Following gene: 209694434

Centisome position: 28.55

GC content: 39.22

Gene sequence:

>1341_bases
ATAAAATATAAAAAAGCCATCGCGGCTAAAGTAGGTACATTATCAAAAAGACATAAGTTTATTTTATTGTCTTTATCTCT
GTTTACCTGCGTTATCTTAATTTGGGAACCTACCCACAGTCTAGGTACTTCCTCATCAGTTCAAGGTCGAAATGAAGTGT
CATTATCAAGTGATAATCTTCAAACATTAGCCGATCAAAACAGTGAACCTGTTGAGACAATCTTTGAACAAGATGATCCT
AATTTCAATGCACCTAAAGATGAACTCGATAAACAGTTAGATGCAGCAGATACTGTGCATTCTCATACTGTTGCAAGCGG
TGAAACACTCGGTGAAATATTCAAACAATATGCGCTACCAATGGCGGATATGTATTCATTATTGGATGTGAATAAGTCAG
CAGCGAACATGAGAGTTGGTGCTGATCTTGAGTGGCAGCAAGATAATGATGGAAAATTAACTGAACTTAAAATTCATCGT
AATATAAAAGACACTGATGTTTATGCGTGGAGTGGCGATAAATACACATTTACGCAGTTAGAAGAGAAAGGTGAAATTAA
ACCGGTATTTCTAACGGGCAGAGTGACGAGTAACTTTTATAACTCAGCACGTTCAGCAGGATTAACGCCTGGACAAATTC
AAACATTGACCAAGCAATTGCAATGGAAATTTGATTTTGGCAGAGAAGCACGTAAAGGTGATAAATTTGCGGTTGAGATA
AATAAAGAATTTATTGATGGAAAGGCCGTGTCATCTGGTGAGGTTGAAGCGGTACTGTACAAAAATGGCAGTAGAGAAAT
TACCTTACTGAAACATACGGATGGTCATTATTATGATGTTCAAGGCCGAAGCTTAAACCGAGCATTGGATCGTTATCCAA
CACATGAGCGTTTTAGAATCAGTTCGCCATTTAACCCATATCGAAAACACCCAATTACAGGGCGTATTTCACCACATAAT
GGGACTGACTTTGCTGCTCCTGTAGGCACCTCTGTTTATGCGACGGGTGATGGAGTGGTTGTTCGAGCTTTACACCATCC
TTTAGCGGGTAATTATGTGATTATTAAGCATGGCCGTGAATACATGACGCGTTATCTTCACTTGAGTAAGATTTTGGTGA
AGAAAGGGCAGAAAGTATCTATGGGCGATAAAATTGCTTTAAGTGGTAATACAGGACGTTCAACAGGGCCACACCTGCAT
TATGAGCTGATTAAAAATGGGCGAGCGGTAAATGCAATGAAAGTTCCTTTACCTCAAGCTTCGCCTGTAGATAATAGCGA
AAGAGCACACTTTAAACAGCAAGCAAAACTCACGATTGATGCATTGCGTGATCAAGTTTAA

Upstream 100 bases:

>100_bases
GGGAACTTGATCCTTTAGCCATACAGCAAGCGGATGAAAATGGGGCTTATTTTATATTTCTATCAACCATCAGTAATGAG
TTATCACGTTGTCTAAGTCA

Downstream 100 bases:

>100_bases
TTATCCAGTGTGATAAAAAATGTAAGCCTTTTCTAATACAGAAAAGGCTTTTTTATTGATTAAGCCAGAGCTTGTGTTGG
GAGGTAAGATTTCCAAGCGT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKYKKAIAAKVGTLSKRHKFILLSLSLFTCVILIWEPTHSLGTSSSVQGRNEVSLSSDNLQTLADQNSEPVETIFEQDDP
NFNAPKDELDKQLDAADTVHSHTVASGETLGEIFKQYALPMADMYSLLDVNKSAANMRVGADLEWQQDNDGKLTELKIHR
NIKDTDVYAWSGDKYTFTQLEEKGEIKPVFLTGRVTSNFYNSARSAGLTPGQIQTLTKQLQWKFDFGREARKGDKFAVEI
NKEFIDGKAVSSGEVEAVLYKNGSREITLLKHTDGHYYDVQGRSLNRALDRYPTHERFRISSPFNPYRKHPITGRISPHN
GTDFAAPVGTSVYATGDGVVVRALHHPLAGNYVIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVDNSERAHFKQQAKLTIDALRDQV

Sequences:

>Translated_446_residues
MKYKKAIAAKVGTLSKRHKFILLSLSLFTCVILIWEPTHSLGTSSSVQGRNEVSLSSDNLQTLADQNSEPVETIFEQDDP
NFNAPKDELDKQLDAADTVHSHTVASGETLGEIFKQYALPMADMYSLLDVNKSAANMRVGADLEWQQDNDGKLTELKIHR
NIKDTDVYAWSGDKYTFTQLEEKGEIKPVFLTGRVTSNFYNSARSAGLTPGQIQTLTKQLQWKFDFGREARKGDKFAVEI
NKEFIDGKAVSSGEVEAVLYKNGSREITLLKHTDGHYYDVQGRSLNRALDRYPTHERFRISSPFNPYRKHPITGRISPHN
GTDFAAPVGTSVYATGDGVVVRALHHPLAGNYVIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVDNSERAHFKQQAKLTIDALRDQV
>Mature_446_residues
MKYKKAIAAKVGTLSKRHKFILLSLSLFTCVILIWEPTHSLGTSSSVQGRNEVSLSSDNLQTLADQNSEPVETIFEQDDP
NFNAPKDELDKQLDAADTVHSHTVASGETLGEIFKQYALPMADMYSLLDVNKSAANMRVGADLEWQQDNDGKLTELKIHR
NIKDTDVYAWSGDKYTFTQLEEKGEIKPVFLTGRVTSNFYNSARSAGLTPGQIQTLTKQLQWKFDFGREARKGDKFAVEI
NKEFIDGKAVSSGEVEAVLYKNGSREITLLKHTDGHYYDVQGRSLNRALDRYPTHERFRISSPFNPYRKHPITGRISPHN
GTDFAAPVGTSVYATGDGVVVRALHHPLAGNYVIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVDNSERAHFKQQAKLTIDALRDQV

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=38.6363636363636, Blast_Score=324, Evalue=9e-90,
Organism=Escherichia coli, GI1789099, Length=102, Percent_Identity=40.1960784313725, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082174, Length=120, Percent_Identity=35.8333333333333, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49799; Mature: 49799

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKKAIAAKVGTLSKRHKFILLSLSLFTCVILIWEPTHSLGTSSSVQGRNEVSLSSDNL
CCHHHHHHHHHHCCCCCCEEEEEEHHHHEEEEEEECCCCCCCCCCCCCCCCCEEECCCCH
QTLADQNSEPVETIFEQDDPNFNAPKDELDKQLDAADTVHSHTVASGETLGEIFKQYALP
HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
MADMYSLLDVNKSAANMRVGADLEWQQDNDGKLTELKIHRNIKDTDVYAWSGDKYTFTQL
HHHHHHHHHCCCCCCCEEECCCEEECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEH
EEKGEIKPVFLTGRVTSNFYNSARSAGLTPGQIQTLTKQLQWKFDFGREARKGDKFAVEI
HCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEE
NKEFIDGKAVSSGEVEAVLYKNGSREITLLKHTDGHYYDVQGRSLNRALDRYPTHERFRI
CHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHHHHHHHCCCCCCEEE
SSPFNPYRKHPITGRISPHNGTDFAAPVGTSVYATGDGVVVRALHHPLAGNYVIIKHGRE
CCCCCHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCHH
YMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLHYELIKNGRAVNAMKVPLPQA
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEHHHHHCCCEEEEEECCCCCC
SPVDNSERAHFKQQAKLTIDALRDQV
CCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKKAIAAKVGTLSKRHKFILLSLSLFTCVILIWEPTHSLGTSSSVQGRNEVSLSSDNL
CCHHHHHHHHHHCCCCCCEEEEEEHHHHEEEEEEECCCCCCCCCCCCCCCCCEEECCCCH
QTLADQNSEPVETIFEQDDPNFNAPKDELDKQLDAADTVHSHTVASGETLGEIFKQYALP
HHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
MADMYSLLDVNKSAANMRVGADLEWQQDNDGKLTELKIHRNIKDTDVYAWSGDKYTFTQL
HHHHHHHHHCCCCCCCEEECCCEEECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEH
EEKGEIKPVFLTGRVTSNFYNSARSAGLTPGQIQTLTKQLQWKFDFGREARKGDKFAVEI
HCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEE
NKEFIDGKAVSSGEVEAVLYKNGSREITLLKHTDGHYYDVQGRSLNRALDRYPTHERFRI
CHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHHHHHHHCCCCCCEEE
SSPFNPYRKHPITGRISPHNGTDFAAPVGTSVYATGDGVVVRALHHPLAGNYVIIKHGRE
CCCCCHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCHH
YMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLHYELIKNGRAVNAMKVPLPQA
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEHHHHHCCCEEEEEECCCCCC
SPVDNSERAHFKQQAKLTIDALRDQV
CCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]