| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is nagE [H]
Identifier: 209694410
GI number: 209694410
Start: 926109
End: 927599
Strand: Direct
Name: nagE [H]
Synonym: VSAL_I0831
Alternate gene names: 209694410
Gene position: 926109-927599 (Clockwise)
Preceding gene: 209694405
Following gene: 209694411
Centisome position: 27.85
GC content: 42.05
Gene sequence:
>1491_bases GTGAATATTTTAGGAAAGTTTCAAAAAGTAGGTAAAGCACTGATGGTACCAGTTGCTACATTACCTGCAGCGGCCATTTT AATGGGTATTGGTTACTGGATTGATCCGGTGGCTTGGGGCGGCAATAGTGCATTAGCAGCGTTTTTAATCAAAGCTGGTG CGTCTATTATTGATAACATGTCTGTACTATTCGCAATTGGTGTTGCTTATGGTATGTCTAAAGATAAAGATGGTGCAGCG GCACTTTCTGGTTTTGTTGGTTTCCTTGTTGTAACGAATCTTCTTTCACCAGGTGCGGTAGCTCAAATTCAAGGCATTGA TCCTGCTGCTGTTCCTGCTGCTTTTAGTAAGATCAACAACCAATTTGTTGGTATTTTAGTTGGTATCATATCTGCTGAAA TTTACAACCGTTTCTCTGCTGTTGAATTGCATAAAACACTTGCATTCTTCTCAGGTAAACGTCTTGTACCTATTCTAACG TCATTTGCAGGTATTTTAATTGCGTTCGTGCTTATGTACGTATGGCCAGCAATCTACGATGGTCTTGTTCACTTCGGCGA ATCAATTCAAGGTATGGGTGCTACGGGTGCAGGTATCTATGCATTCTTCAACCGTCTATTGATTCCTGTAGGTCTTCACC ATGCACTTAACTCAGTGTTCTGGTTCGACGTTGCTGGTATTAACGACATCCCTAACTTCCTAGGTGGCGCTAAGTCTATC GCTGAAGGTACTGCAACTGTCGGTGTTACCGGTATGTACCAAGCTGGTTTCTTCCCAATCATGATGTTTGGTCTACCAGG CGCAGCACTAGCTATCTACCACACTGCAAAAGTTGAGAACAAAGAAAAAGTAGCATCGATTATGATCGCTGCAGGTTTCG CATCGTTCTTTACGGGTGTAACTGAACCTCTAGAATTCTCATTCATGTTCCTTGCTCCTGCATTGTATGTAGTTCACGCA GCATTGACGGGTATCTCTGTATTCATCGCAGCATCTATGCATTGGATTGCAGGCTTCGGTTTCTCTGCCGGCCTAGTTGA TATGGTTCTTTCTAGTCGTAACCCACTAGCGGTTAATTGGTATATGCTAATTATCCAAGGTATCGTTTTCTTCGCTCTAT ACTACTTTATCTTCCGCGCTGTAATCCTTAAGTTTAACCTTAAGACTCCAGGACGTGAAGACGATGATGAAGAAGAAAGC TCAATCCGTGGTTCTAAAGAAACTGGTGAACTAGCTAAGCAATACCTTAAAGCGCTTGGTGGTCACGACAATATAGAAAA CATTGATGCTTGTATTACTCGTTTACGCTTAACTCTTAGAGATACTAGCGTAATCAGCGAGAAGCAACTTAAAGGTCTTG GTGCAATGGGTGTTGTTAAACTTGGTTCAAACAATGTTCAAGTTATCCTAGGTCCTCTTACTGAAATCGTTGCTGGTGAA ATGAAAAAAATCCCAGCGTCTGAAGACTTAACAGCAGTTGCACTACCATAA
Upstream 100 bases:
>100_bases TTACACTGACCCTGTTAATAACGAGTAGCGAAATAAGTTTATAATAAGCTAACGTAAGCTACTCAAAAAAATCTAAAATC CTTATAGGGGGAATCTAAAG
Downstream 100 bases:
>100_bases TTATTGAGTAAATTAACTCGATTTAATAAGCCGCTCTAATTAGAGCGGCTTTTTTATGGAAATAAAGCAACTATTTGATT CTATATATTGAGTATTGGCC
Product: PTS permease for N-acetylglucosamine and glucose
Products: NA
Alternate protein names: EIICBA-Nag; EII-Nag; N-acetylglucosamine permease IIC component; PTS system N-acetylglucosamine-specific EIIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; PTS system N-acetylglucosamine-specific EIIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component; PTS system N-acetylglucosamine-specific EIIA component [H]
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MNILGKFQKVGKALMVPVATLPAAAILMGIGYWIDPVAWGGNSALAAFLIKAGASIIDNMSVLFAIGVAYGMSKDKDGAA ALSGFVGFLVVTNLLSPGAVAQIQGIDPAAVPAAFSKINNQFVGILVGIISAEIYNRFSAVELHKTLAFFSGKRLVPILT SFAGILIAFVLMYVWPAIYDGLVHFGESIQGMGATGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSI AEGTATVGVTGMYQAGFFPIMMFGLPGAALAIYHTAKVENKEKVASIMIAAGFASFFTGVTEPLEFSFMFLAPALYVVHA ALTGISVFIAASMHWIAGFGFSAGLVDMVLSSRNPLAVNWYMLIIQGIVFFALYYFIFRAVILKFNLKTPGREDDDEEES SIRGSKETGELAKQYLKALGGHDNIENIDACITRLRLTLRDTSVISEKQLKGLGAMGVVKLGSNNVQVILGPLTEIVAGE MKKIPASEDLTAVALP
Sequences:
>Translated_496_residues MNILGKFQKVGKALMVPVATLPAAAILMGIGYWIDPVAWGGNSALAAFLIKAGASIIDNMSVLFAIGVAYGMSKDKDGAA ALSGFVGFLVVTNLLSPGAVAQIQGIDPAAVPAAFSKINNQFVGILVGIISAEIYNRFSAVELHKTLAFFSGKRLVPILT SFAGILIAFVLMYVWPAIYDGLVHFGESIQGMGATGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSI AEGTATVGVTGMYQAGFFPIMMFGLPGAALAIYHTAKVENKEKVASIMIAAGFASFFTGVTEPLEFSFMFLAPALYVVHA ALTGISVFIAASMHWIAGFGFSAGLVDMVLSSRNPLAVNWYMLIIQGIVFFALYYFIFRAVILKFNLKTPGREDDDEEES SIRGSKETGELAKQYLKALGGHDNIENIDACITRLRLTLRDTSVISEKQLKGLGAMGVVKLGSNNVQVILGPLTEIVAGE MKKIPASEDLTAVALP >Mature_496_residues MNILGKFQKVGKALMVPVATLPAAAILMGIGYWIDPVAWGGNSALAAFLIKAGASIIDNMSVLFAIGVAYGMSKDKDGAA ALSGFVGFLVVTNLLSPGAVAQIQGIDPAAVPAAFSKINNQFVGILVGIISAEIYNRFSAVELHKTLAFFSGKRLVPILT SFAGILIAFVLMYVWPAIYDGLVHFGESIQGMGATGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSI AEGTATVGVTGMYQAGFFPIMMFGLPGAALAIYHTAKVENKEKVASIMIAAGFASFFTGVTEPLEFSFMFLAPALYVVHA ALTGISVFIAASMHWIAGFGFSAGLVDMVLSSRNPLAVNWYMLIIQGIVFFALYYFIFRAVILKFNLKTPGREDDDEEES SIRGSKETGELAKQYLKALGGHDNIENIDACITRLRLTLRDTSVISEKQLKGLGAMGVVKLGSNNVQVILGPLTEIVAGE MKKIPASEDLTAVALP
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786894, Length=497, Percent_Identity=44.6680080482897, Blast_Score=349, Evalue=2e-97, Organism=Escherichia coli, GI1787343, Length=497, Percent_Identity=38.2293762575453, Blast_Score=295, Evalue=3e-81, Organism=Escherichia coli, GI1787908, Length=514, Percent_Identity=35.0194552529183, Blast_Score=267, Evalue=1e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR004719 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011535 - InterPro: IPR010974 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 52715; Mature: 52715
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILGKFQKVGKALMVPVATLPAAAILMGIGYWIDPVAWGGNSALAAFLIKAGASIIDNM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH SVLFAIGVAYGMSKDKDGAAALSGFVGFLVVTNLLSPGAVAQIQGIDPAAVPAAFSKINN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH QFVGILVGIISAEIYNRFSAVELHKTLAFFSGKRLVPILTSFAGILIAFVLMYVWPAIYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLVHFGESIQGMGATGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSI HHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCHHHH AEGTATVGVTGMYQAGFFPIMMFGLPGAALAIYHTAKVENKEKVASIMIAAGFASFFTGV HCCCHHCCCCHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC TEPLEFSFMFLAPALYVVHAALTGISVFIAASMHWIAGFGFSAGLVDMVLSSRNPLAVNW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHH YMLIIQGIVFFALYYFIFRAVILKFNLKTPGREDDDEEESSIRGSKETGELAKQYLKALG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHC GHDNIENIDACITRLRLTLRDTSVISEKQLKGLGAMGVVKLGSNNVQVILGPLTEIVAGE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECHHHHHHHHH MKKIPASEDLTAVALP HHCCCCCCCCEEEECC >Mature Secondary Structure MNILGKFQKVGKALMVPVATLPAAAILMGIGYWIDPVAWGGNSALAAFLIKAGASIIDNM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH SVLFAIGVAYGMSKDKDGAAALSGFVGFLVVTNLLSPGAVAQIQGIDPAAVPAAFSKINN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH QFVGILVGIISAEIYNRFSAVELHKTLAFFSGKRLVPILTSFAGILIAFVLMYVWPAIYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLVHFGESIQGMGATGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGAKSI HHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCHHHH AEGTATVGVTGMYQAGFFPIMMFGLPGAALAIYHTAKVENKEKVASIMIAAGFASFFTGV HCCCHHCCCCHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC TEPLEFSFMFLAPALYVVHAALTGISVFIAASMHWIAGFGFSAGLVDMVLSSRNPLAVNW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHH YMLIIQGIVFFALYYFIFRAVILKFNLKTPGREDDDEEESSIRGSKETGELAKQYLKALG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHC GHDNIENIDACITRLRLTLRDTSVISEKQLKGLGAMGVVKLGSNNVQVILGPLTEIVAGE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECHHHHHHHHH MKKIPASEDLTAVALP HHCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3284790; 3056518; 8905232; 9278503 [H]