Click here to switch to the map view.

The map label for this gene is rfaH [H]

Identifier: 209694405

GI number: 209694405

Start: 919200

End: 919697

Strand: Direct

Name: rfaH [H]

Synonym: VSAL_I0826

Alternate gene names: 209694405

Gene position: 919200-919697 (Clockwise)

Preceding gene: 209694403

Following gene: 209694410

Centisome position: 27.64

GC content: 33.73

Gene sequence:

>498_bases
ATGAAACTGTGGTATTTACTTTATTGTAAACGTGGAGATCAGCAACGAGCAAAGTTGCATCTAGAAAATCAGAATGTAGA
GTGTTTTTATCCTGAAATTGACGTCGAAAAGATGATAAGGGGAAAACGAACGACAGTGAAGGAGCCTTTATTTCCTTGTT
ATATGTTCGTAAGGTTTGATTTTACTGTTGGACCGACCTTTACGACGATTCGTTCAACACGTGGTATTAGTGATTTTGTG
CGTTTTGGGTCACAACCTACCGTTTTAAATGGTGATCTTATTTATTCATTAAAGCAATTAGGTGAAAATCTGCATCATAA
AAAAACCATAGAGTGCTTGCCTGAAAGTGGACAAAAAGTAGATATTATCGAAGGGCCATATACTGGGATTGATGCTATTT
ATAAAGAAGCAGATGGAGAAATGCGTTCAATTCTTTTGATTACATTAATAAATAAAAAAGTAGAAATAAAAATAGAAAAT
ATTAATGTGGGTTTCTAA

Upstream 100 bases:

>100_bases
TGTGTATCTTAATTCTATGCTGCCTTTATACAAGGTAGAAATTCTTTTCATTTTGATAGCGTGATATTATTAGCACTGGT
TAGGTGCAGGGATAGAGATA

Downstream 100 bases:

>100_bases
ATAAAAAAAGCGCTAAGAGCGCTTTTTTTATGAATGCTTATTTTAGTTAGCTATAAGCTTCGTTATGTATGGCTTGAACG
GCTCGTCCTGATGGGTCTGC

Product: transcriptional activator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKLWYLLYCKRGDQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFPCYMFVRFDFTVGPTFTTIRSTRGISDFV
RFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLPESGQKVDIIEGPYTGIDAIYKEADGEMRSILLITLINKKVEIKIEN
INVGF

Sequences:

>Translated_165_residues
MKLWYLLYCKRGDQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFPCYMFVRFDFTVGPTFTTIRSTRGISDFV
RFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLPESGQKVDIIEGPYTGIDAIYKEADGEMRSILLITLINKKVEIKIEN
INVGF
>Mature_165_residues
MKLWYLLYCKRGDQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFPCYMFVRFDFTVGPTFTTIRSTRGISDFV
RFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLPESGQKVDIIEGPYTGIDAIYKEADGEMRSILLITLINKKVEIKIEN
INVGF

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=162, Percent_Identity=50, Blast_Score=156, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19098; Mature: 19098

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLWYLLYCKRGDQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFPCYMFVRFD
CCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEEE
FTVGPTFTTIRSTRGISDFVRFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLPESGQKV
EEECCCEEEHHCCCCHHHHHHCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECCCCCCEE
DIIEGPYTGIDAIYKEADGEMRSILLITLINKKVEIKIENINVGF
EEEECCCCCHHHHHHHCCCCHHEEEEEEEECCEEEEEEEEEECCC
>Mature Secondary Structure
MKLWYLLYCKRGDQQRAKLHLENQNVECFYPEIDVEKMIRGKRTTVKEPLFPCYMFVRFD
CCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEEE
FTVGPTFTTIRSTRGISDFVRFGSQPTVLNGDLIYSLKQLGENLHHKKTIECLPESGQKV
EEECCCEEEHHCCCCHHHHHHCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECCCCCCEE
DIIEGPYTGIDAIYKEADGEMRSILLITLINKKVEIKIENINVGF
EEEECCCCCHHHHHHHCCCCHHEEEEEEEECCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]