| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693877
Identifier: 209693877
GI number: 209693877
Start: 316286
End: 317005
Strand: Direct
Name: 209693877
Synonym: VSAL_I0269
Alternate gene names: NA
Gene position: 316286-317005 (Clockwise)
Preceding gene: 209693876
Following gene: 209693878
Centisome position: 9.51
GC content: 42.64
Gene sequence:
>720_bases ATGGGGTTCCGTCTTATTTGCCTTACTTTAGCGATGAGCGCCAGTGTTCAATCTGTCATGGCAAACGAGCAAGTTCGAGA GGCATCGTGCTCTGTCGCATCAAGCTATGGCATTTATCTAAGTGGTATTCACACTGGAGAAATGAAGCGAGTAGAAGCTT GGCAAGGCACTAGAGCAATCATCACCTCCAATAGCAAAGCCAGTATTCTAGGTATTGGCACCGCTTACTCGCAAAGTGCT GAAGTCTCTTGGTCAGAGTTAGAGAATGAATGGGTAACAGACAAGTTTCATCAAAAAGTGTCAGGTTTCCGTTCAAGAGA TATGAAGGTAACCTTTACCGACGGAGGACATCAATCAGACGTTGATATTGATGGTAAAGAATCGACTTATTTTTCTAAAG AGATTCCATTAAGGGATGTTGATACGTTATCGATTCAAATTCGTGAAAACCTACTGCAAGGTAAACAAACGTTTCGTTTA AATCGTCAAGCGTCTGATGGCATTGAACCTTACCAATACCAAGTGCATGAAAAGCAGATTAAGACATTTGAAAAATGGGG AGAGCTAGAGGTTATCCCTGTTGAGCAAACGGGTGCAGAGCATGTCACTTTTTTGTTTGCGCCAGAGTTAGAGTATCAAC TTATCGAAGCGCGTTATCATGGGTTTATTCTTCGAGGTCTTTTGACGCTTGAAGGTTATGAGTCAACGTGTGGAGGCTAG
Upstream 100 bases:
>100_bases GCTTTCGATTTAAAGTCAAAGATAATATCAATTTGCGTGCGGATGTTGGTATCGGTCAAAATGAAACCAATTTCTACTTA AACGTAAACGAAGTCTTCTA
Downstream 100 bases:
>100_bases AGGCTAGAGGCTAGAGAGTAGAACGCTTCGCTCCTATAAGATCTTTAAGATAAGAGCAGGGTTACTCGCTTTTTATACGA CTGAATGTCAAGAATTCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MGFRLICLTLAMSASVQSVMANEQVREASCSVASSYGIYLSGIHTGEMKRVEAWQGTRAIITSNSKASILGIGTAYSQSA EVSWSELENEWVTDKFHQKVSGFRSRDMKVTFTDGGHQSDVDIDGKESTYFSKEIPLRDVDTLSIQIRENLLQGKQTFRL NRQASDGIEPYQYQVHEKQIKTFEKWGELEVIPVEQTGAEHVTFLFAPELEYQLIEARYHGFILRGLLTLEGYESTCGG
Sequences:
>Translated_239_residues MGFRLICLTLAMSASVQSVMANEQVREASCSVASSYGIYLSGIHTGEMKRVEAWQGTRAIITSNSKASILGIGTAYSQSA EVSWSELENEWVTDKFHQKVSGFRSRDMKVTFTDGGHQSDVDIDGKESTYFSKEIPLRDVDTLSIQIRENLLQGKQTFRL NRQASDGIEPYQYQVHEKQIKTFEKWGELEVIPVEQTGAEHVTFLFAPELEYQLIEARYHGFILRGLLTLEGYESTCGG >Mature_238_residues GFRLICLTLAMSASVQSVMANEQVREASCSVASSYGIYLSGIHTGEMKRVEAWQGTRAIITSNSKASILGIGTAYSQSAE VSWSELENEWVTDKFHQKVSGFRSRDMKVTFTDGGHQSDVDIDGKESTYFSKEIPLRDVDTLSIQIRENLLQGKQTFRLN RQASDGIEPYQYQVHEKQIKTFEKWGELEVIPVEQTGAEHVTFLFAPELEYQLIEARYHGFILRGLLTLEGYESTCGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26867; Mature: 26735
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFRLICLTLAMSASVQSVMANEQVREASCSVASSYGIYLSGIHTGEMKRVEAWQGTRAI CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHCCCCEEE ITSNSKASILGIGTAYSQSAEVSWSELENEWVTDKFHQKVSGFRSRDMKVTFTDGGHQSD EECCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC VDIDGKESTYFSKEIPLRDVDTLSIQIRENLLQGKQTFRLNRQASDGIEPYQYQVHEKQI CCCCCCCCCEEECCCCCCCCCEEEHEEHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHH KTFEKWGELEVIPVEQTGAEHVTFLFAPELEYQLIEARYHGFILRGLLTLEGYESTCGG HHHHHCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHEEHHHEECCCCCCCCC >Mature Secondary Structure GFRLICLTLAMSASVQSVMANEQVREASCSVASSYGIYLSGIHTGEMKRVEAWQGTRAI CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHCCCCEEE ITSNSKASILGIGTAYSQSAEVSWSELENEWVTDKFHQKVSGFRSRDMKVTFTDGGHQSD EECCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC VDIDGKESTYFSKEIPLRDVDTLSIQIRENLLQGKQTFRLNRQASDGIEPYQYQVHEKQI CCCCCCCCCEEECCCCCCCCCEEEHEEHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHH KTFEKWGELEVIPVEQTGAEHVTFLFAPELEYQLIEARYHGFILRGLLTLEGYESTCGG HHHHHCCCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHEEHHHEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA