| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693686
Identifier: 209693686
GI number: 209693686
Start: 61632
End: 62159
Strand: Direct
Name: 209693686
Synonym: VSAL_I0057
Alternate gene names: NA
Gene position: 61632-62159 (Clockwise)
Preceding gene: 209693685
Following gene: 209693687
Centisome position: 1.85
GC content: 32.77
Gene sequence:
>528_bases ATGAAAAAAAATATATTAAAAATTAGTTTAATTACTATTATTTCAGGTTGTAGCCATAGCCATACTATTGATATATATAC ATGGGTTCCTGAAAACCAATCACCAAAAATAACAACAGAGAAAGACATTAATTACTGGAATAAAAAAGGATATTACGATG GTGCTTGTGGTTGGACGTTAAGTACGAAGATTTCAATATTACCACCGCCAAATAGCCCTGATTATATATATGGCACTGAA CAAATTTTTGAATATGATCTTAGTGGAAAAATAATTACTCAATGGGCAGCTCCTGCAAATTCATATCCAATAGCAATTCA AGATGATTTGATGTTTATCGATAGTGGATTAGCAATAAGCACCGATGGACAACTAAAACAGATGACATTTAACAAGCAAA AAGTGGTGTACTCATCCTGCCCTGAGAATTTAGACATTGATAATTCGGATTATTTAAGGTGTGCCATATTCAGCGACACG CTATTTGTAAAAGACCGAAATATTGCTTATCAAGCTCCTTGTACTTAA
Upstream 100 bases:
>100_bases ATAACTTTTCCGTTAGTACTTAACTTTCCCGTTAGTACTTAATAGCGGCAAAAATCACCCTCATATCATGTTGTTTAAAC TCTATAATTAAGATAAATGT
Downstream 100 bases:
>100_bases ATTTCAGCTATAAATACCACTAGTGACATTAGGGTCTACCCTAATGTCATGGCTTGAATTTTAACCTTAGAACTCCTTTG TCATTACCTTTTTGTCATGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT LFVKDRNIAYQAPCT
Sequences:
>Translated_175_residues MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT LFVKDRNIAYQAPCT >Mature_175_residues MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT LFVKDRNIAYQAPCT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19785; Mature: 19785
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTL CCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEE STKISILPPPNSPDYIYGTEQIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAIS ECEEEEECCCCCCCEEEECHHEEEECCCCEEEEEECCCCCCCCEEEECCEEEEECCEEEE TDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDTLFVKDRNIAYQAPCT CCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCEEEECCCC >Mature Secondary Structure MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTL CCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEE STKISILPPPNSPDYIYGTEQIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAIS ECEEEEECCCCCCCEEEECHHEEEECCCCEEEEEECCCCCCCCEEEECCEEEEECCEEEE TDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDTLFVKDRNIAYQAPCT CCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA